Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2084 ATGGAAACCCCGTCTTCAAATGGATCGGTTTCGAAGCGTTCGCTGAGGAGGAAGGTGAATTTGAGGAACTATGATGAGGATCTGATGGATGAGATGTTTGAGAAGCAGTTGGGAGGTGGTTTGAAGAAGAGGAGTAGGACTAAGGAAGATTTGGAGAAGGAAACTGAGACTGAGGCTATGATTGCGATGTCGCTCGGTTTTCCTATTGATGCTTTGCTTGAGGAGGAGATTAAAGCTGGGGTTGTGAGGGAGTTGGGTGGGAAGGAGCAGAATGATTATATAGTCATAAGGAATCATATATTGGCTCTGTGGAGGAGGGGGAATGTCAGGTTGTGGTTGAGTAAAGGGATGGTTAGAGAAACTGTGAGCAATGAGTATGATCATTTGATTAATTCTGCTTATGACTATCTTTTGTATAACGGCTACATAAATTTTGGCGTTTCACCCGCGTTTACTTCTCAGTTGCCCGAGTCAACTGAGGGGACTGCGGTTGTTATTGGTGCTGGCCTTGCCGGGTTGGCAGCAGCGAGGCAACTCTTGTCGTTTGGTTACAAGGTTGTGGTTTTGGAAGGCAGGAGCCGGCCTGGTGGTCGAGTTTATACTCAGAAGGTGGGGCGCGAGGGTAAGTTTGCTTCCATTGATCTTGGTGGGAGTATTATTACAGGCATTCATGCTAACCCTTTAGGGGTTCTGGCTCGACAGCTTTCTATACCACTTCATAAAGTCAGAGATGATTGCCCTTTGTATAAGCCAAATGGGGCACCGGTTGATAAGGAAACGGATGCAAGCGTTGAATTTGTATTCAATAAGTTGCTTGACAAGGTTATGGAGTTGAGGCAAATTATGGGTGGGTTCGCAAGTGATACCTCTCTTGGTTCGGTCTTGGAGATGCTCAGGCGGTTGTATAATGTGACCCGAAGTACAGATGAGAAGCAGTTGCTTGATTGGCATCTTGCAAATTTGGAATATGCAAATGCTGGGTGCCTTTCAAATCTTTCGGCTGCCTATTGGGATCAAGATGATCCTTATGAAATGAGCGGTGATCACTGCTTTCTTGCTGGAGGAAATATGGGGTTGATAAAAGCTTTATGTGAAGGAGTTCCTGTTTTTTATGGAAAGACCGTCAATACTATCAGATATGGAAATGAGGGTGTTGAGGTTATTGCTGGGGAACATGTCTTTCAAGCAGATATCGCCTTATGCACTGTGCCTCTTGGAGTTCTTAAAAAGAAGGCCATCAGTTTTGAACCTGAATTGCCTGCAAGGAAATTGGAAGCAATTGAGAGGATGGGGTTTGGGCTGCTGAACAAGGTTGCTATGGTTTTTCCTCATGTGTTTTGGGGGGAAGATCGAGACACATTTGGATGTCTCAATGAACATAGTCATCAACGTGGGGAATTTTTCCTATTTTACTGTTACCATACAGTTTCTGGAGGTCCAGCACTTATTGCGCTGGTGGCTGGTGAAGCTGCACAAGCCTTTGAATCCACAGATGCTTCCATTTTGCTGCATCGGGTTTTGACCGTGTTAAAAGGAATATTTCATCCCAAAGGCATCATTGTGCCTGATCCAATACAGTCAATTTGTACAAGATGGGGCAGTGATCCCCTTTCTTATGGTTCCTACTCTCATGTTAGCGTTAATTCATCTGGTGCCGATTATGATATACTCGCTGAAAACGTGGGGAATAGATTGTTCTTTGCTGGTGAGGCCACGAGTAGGCAATACCCAGCTACTATGCATGGTGCTTTCTTGAGTGGCTTAAGGGAAGCATCACACATTTACCGATCAGCTCGGATTCAAAACAATCCTAGGAAGTGCATGCCTAAGAATATCGTAAGCAATGACATCCTGGGTGATTTATTCAAGTGGCCTGATTTGGAATTTGGGAAGTTTGCTTTCATTTTTTATCCGTCTCCAGAAAATCTGCAGTCAACGGGGCTTCTGCAAGTCACTATTGGTGATGCTGAAGAAATTTATGAGGAGCTGTTTAGCAGCTACCCAAATGCAGCAAAGTGGCCCTTGCAGCTGTACACTATAATATCCCGTGAACAAGCCCAGCAGCTACAAAAAGTTGAGGGAGGGAATGAAAGCCGGTTATCCTTTTTGGTAAAAACCCTTGGCTTAAAGCTTATGGGGCCAAATGCTTTGCTTACTGCAGGCAACACATTGATAGCTAGCATAGCTCATTCACGGAAAGGCCGGTGGAGGAACCGTGTAATTACTTGTTAA 2232 0.4476 METPSSNGSVSKRSLRRKVNLRNYDEDLMDEMFEKQLGGGLKKRSRTKEDLEKETETEAMIAMSLGFPIDALLEEEIKAGVVRELGGKEQNDYIVIRNHILALWRRGNVRLWLSKGMVRETVSNEYDHLINSAYDYLLYNGYINFGVSPAFTSQLPESTEGTAVVIGAGLAGLAAARQLLSFGYKVVVLEGRSRPGGRVYTQKVGREGKFASIDLGGSIITGIHANPLGVLARQLSIPLHKVRDDCPLYKPNGAPVDKETDASVEFVFNKLLDKVMELRQIMGGFASDTSLGSVLEMLRRLYNVTRSTDEKQLLDWHLANLEYANAGCLSNLSAAYWDQDDPYEMSGDHCFLAGGNMGLIKALCEGVPVFYGKTVNTIRYGNEGVEVIAGEHVFQADIALCTVPLGVLKKKAISFEPELPARKLEAIERMGFGLLNKVAMVFPHVFWGEDRDTFGCLNEHSHQRGEFFLFYCYHTVSGGPALIALVAGEAAQAFESTDASILLHRVLTVLKGIFHPKGIIVPDPIQSICTRWGSDPLSYGSYSHVSVNSSGADYDILAENVGNRLFFAGEATSRQYPATMHGAFLSGLREASHIYRSARIQNNPRKCMPKNIVSNDILGDLFKWPDLEFGKFAFIFYPSPENLQSTGLLQVTIGDAEEIYEELFSSYPNAAKWPLQLYTIISREQAQQLQKVEGGNESRLSFLVKTLGLKLMGPNALLTAGNTLIASIAHSRKGRWRNRVITC* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2084 743 SUPERFAMILY FAD-linked reductases, C-terminal domain 431 544 - -
Gso6g2084 743 Gene3D - 245 550 - -
Gso6g2084 743 SUPERFAMILY FAD/NAD(P)-binding domain 161 596 IPR036188 -
Gso6g2084 743 ProSiteProfiles SWIRM domain profile. 52 154 IPR007526 GO:0005515
Gso6g2084 743 PANTHER FLAVIN MONOAMINE OXIDASE 37 735 - -
Gso6g2084 743 SUPERFAMILY Homeodomain-like 54 157 IPR009057 -
Gso6g2084 743 Pfam Flavin containing amine oxidoreductase 170 594 IPR002937 GO:0016491
Gso6g2084 743 Gene3D - 164 593 IPR036188 -
Gso6g2084 743 Pfam SWIRM domain 70 145 IPR007526 GO:0005515
Gso6g2084 743 Gene3D - 57 156 IPR036388 -
Gso6g2084 743 PANTHER LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 2 37 735 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2084 Gso-Chr6 38871191 38876500 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-SWI3 Gso6g2084 Amino_oxidase 6.1e-87 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2084 - - gmx:100809901 1465.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g2084 6 38871191 38876500 Gso6g2084 6 38871191 38876500 ECH