Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01380 ATGGAAACACCGTCTTCGAATGGATCAGTTTCGAAGCGTTCGCTGAGGAGGAAGGTGAATTTGCGGAACTATGATGAGGATCTGATGGATGAGTTGTTTGAGAAGCAGTTGGGAGGTGGTTTGAAGAAGAGGAATAGGACCAAAGAGGATATGGAGAAGGAGACTGAGGTCGAGGCCATGATTGCGATTTCGCTTGGTTTCCCCATTGATGCTTTGCTTGAGGAGGAGATTAGAGCTGGGGTTGTGAGGCAGTTGGGTGGGAAGGAGCAGAATGATTATATTGTTATAAGGAATCATATATTGGCTCTGTGGAGGGGGAATGTGAGGTTGTGGTTGAGTAAGGGGATGATTAGAGAAACTGTGAGTAATGAGTATGAGCATTTGATTAATTCTGCTTATGACTTCCTTTTGTGTAATGGATATATAAATTTTGGGGTTTCACCATCGTTTATGTCTCAGTTGCCTGAGCCGACTGAAGGGACTGTGGTTGTTATTGGTGCTGGCCTTGCTGGGTTGGCAGCAGCGAGGCAGCTCCTATCATTTGGTTTCAAGGTTGTGGTTTTGGAAGGCAGGAGCCGGCCTGGTGGTCGAGTTTATACTCAGAAGATGGGGCGCACGGGTAAATTTGCCGCCATTGATCTTGGCGGGAGTGTTATCACTGGCATTCATGCTAACCCTTTAGGGGTTCTGGCTCGACAGCTTTCTATACCACTTCATAAAGTCAGAGATAATTGCCCTTTATATAAGCCAAATGGGGCACCGGTTGATCAGGAAATGGATGCAAGCGTTGAATTCGTATTTAATAGGTTGCTTGACAAAGTTATGGAGTTGAGGCAAATTATGGGTGGGTTTGCAAGTGATACCTCCCTTGGTTCAGTCTTGGAGACTCTCAGGCGTTTGTATAATGTGGCCCGAAGTACTGATGAGAGGCAGTTGCTTGATTGGCATCTTGCGAATTTGGAATATGCAAATGCTGGGTGCCTCTCAAATCTTTCAGCAGCCTATTGGGATCAGGATGATCCTTATGAAATGGGTGGTGATCACTGCTTTCTTGCTGGAGGCAATTGGAGGTTGATTAAAGCTTTATGTGAAGGAGTTCCTATTTTTTATGGAAAAACCGTTAACACTATCAAATATGGAAATCAGGGTGTTGAGGTTATTGCTGGGGACCAAGTCTTTCAAGCAGATATTGTCTTATGCACTGCCCCTCTTGGAGTTCTGAAAAAGAAGGCCATCAGTTTTGAACCCGAATTACCTGCAAGGAAACTGGCAGCAATTGAGAGGATGGGGTTTGGGCTGCTGAACAAAGTTGCTATGGTTTTTCCTTATGTGTTTTGGGGGGAAGATCGAGACACGTTTGGATGTCTCAATGAATATACTCATCAACGTGGGGAATTTTTCCTATTTTACAGTTACCATACAGTTTCTGGAGGTCCAGCACTTCTTGCACTGGTGGCTGGTGAAGCTGCACAAGCCTTTGAATCCACAGATCCTTCCATTTTGCTCCATCGGATTTTGACTGTTTTAAAAGGAATATTTCATCCTAAGGGCATCATTGTTCCTGATCCAATACAGTCAATTTGTACAAGATGGGGCAGCGATCCCTTTTCTTATGGTTCATACTCTCATGTTAGTGTGAACTCATCCGGCAATGATTATGATATACTTGCAGAAAATGTGGGGAACCGGCTGTTCTTTGCTGGTGAGGCCACAAGCAGGCAATATCCAGCAACTATGCATGGTGCTTTCTTGAGTGGCTTGAGGGAAGCTTCACGCATTTACCGATCAGCCCGGCTTCAGCAAAACAATCCTAGGAAGTTCATGACAAAGAATATTGGACCAAACAATGATGTACTGGTTGATTTATTCAAGAGGCCTGATTTGGAATCTGGGAAATTTTCTTTCATATTTGATTCTTCATCAGAAAACCTGCAGTCAATGGGGCTTCTGCAAGTCACTTTTGGTGATGCTGAAGAAAGTTACAAGGAGCTGTTAAACAGCTACCCAAATTCCATAAAGTTGCCATTGCAGCTTTACACTATAATATCTCGTGAACAGGCGCAGAAGCTACAACAAATTGAGGGAGGGGATGAAAGCAGGTTATCATTTTTGGTAAAAAGCCTTGGCTTGAAGCTTATGGGGTCAAATGCTTTGTACAATGCAGGTAACTCATTAATAGCAACTATTGCTTATTCGCGAAAAGGGCGGGGGAGGAACCGCATGATTACCTGGTAA 2235 0.4407 METPSSNGSVSKRSLRRKVNLRNYDEDLMDELFEKQLGGGLKKRNRTKEDMEKETEVEAMIAISLGFPIDALLEEEIRAGVVRQLGGKEQNDYIVIRNHILALWRGNVRLWLSKGMIRETVSNEYEHLINSAYDFLLCNGYINFGVSPSFMSQLPEPTEGTVVVIGAGLAGLAAARQLLSFGFKVVVLEGRSRPGGRVYTQKMGRTGKFAAIDLGGSVITGIHANPLGVLARQLSIPLHKVRDNCPLYKPNGAPVDQEMDASVEFVFNRLLDKVMELRQIMGGFASDTSLGSVLETLRRLYNVARSTDERQLLDWHLANLEYANAGCLSNLSAAYWDQDDPYEMGGDHCFLAGGNWRLIKALCEGVPIFYGKTVNTIKYGNQGVEVIAGDQVFQADIVLCTAPLGVLKKKAISFEPELPARKLAAIERMGFGLLNKVAMVFPYVFWGEDRDTFGCLNEYTHQRGEFFLFYSYHTVSGGPALLALVAGEAAQAFESTDPSILLHRILTVLKGIFHPKGIIVPDPIQSICTRWGSDPFSYGSYSHVSVNSSGNDYDILAENVGNRLFFAGEATSRQYPATMHGAFLSGLREASRIYRSARLQQNNPRKFMTKNIGPNNDVLVDLFKRPDLESGKFSFIFDSSSENLQSMGLLQVTFGDAEESYKELLNSYPNSIKLPLQLYTIISREQAQKLQQIEGGDESRLSFLVKSLGLKLMGSNALYNAGNSLIATIAYSRKGRGRNRMITW 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01380 744 ProSiteProfiles SWIRM domain profile. 52 153 IPR007526 GO:0005515
Cca04g01380 744 SUPERFAMILY FAD-linked reductases, C-terminal domain 430 543 - -
Cca04g01380 744 PANTHER LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 2 37 736 - -
Cca04g01380 744 Gene3D - 162 592 IPR036188 -
Cca04g01380 744 SUPERFAMILY Homeodomain-like 54 157 IPR009057 -
Cca04g01380 744 Gene3D - 58 154 IPR036388 -
Cca04g01380 744 SUPERFAMILY FAD/NAD(P)-binding domain 158 595 IPR036188 -
Cca04g01380 744 Pfam Flavin containing amine oxidoreductase 169 593 IPR002937 GO:0016491
Cca04g01380 744 Pfam SWIRM domain 73 144 IPR007526 GO:0005515
Cca04g01380 744 Gene3D - 244 549 - -
Cca04g01380 744 PANTHER FLAVIN MONOAMINE OXIDASE 37 736 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01380 Cca-Chr4 18020827 18032672 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-SWI3 Cca04g01380 Amino_oxidase 2.7e-91 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01380 - - gmx:100809901 1298.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01380 04 18020827 18032672 Cca04g01380 04 18020827 18032672 ECH