Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01057 ATGGAGATCTCTAAAAGTTCCGTTCTAATCCTCTTGGTAGTGTTCGCCTCAAGCTTGATCCATGCCAAGGCATATCACGGCCTATACTGTGGCACCAGAGGAACCCGATGCTATGGAAAGTACATCACGTGTCCTGATGAATGCCCAGAAAGTGAAACAAATGAACCTAAGACTAAGGTTTGTCACATCGATTGCAACAAACCTATTTGCCGGGCTGTCTGCAGAAGTCGCAAGCCAAACTGCAATGCACCAGGATCAGGATGCTATGATCCCCGTTTCATTGGTGGAGATGGTAGAGTCTTCTACTTCCACGGAAAGAGCAATGAACACTTCAGCCTAGTTTCTGATTCCAACCTCCAAATCAACGCACGCTTCATCGGACACAGGCCAGCTGGCAGAAGCCGTGACTACACCTGGATTCAAGCCCTAGGAGTCCTCTTCAACTCCAAAACCTTCTCACTTGAGGCCACCAAGACACCCCAATGGGACGATCTTGAGCACCTCAAACTCACCTACAATGGGAACCAAGTGGCCCTACCTGAAGGCTCTCTCTCCACGTGGCAAAATGAGGAAAAAGATGTGAAGGTGGAGAGAGTAGCGAGTAAGAACAGTGTCATGGTTACACTGAAGGATGTGGCTGAAATATTGGTCAATGTTGTGCCAGTAACCAAAGAAGATGACAGGATTCACAACTACCAAGTGCCCTCTGATGACTGTTTTGCTCACTTGGAAGTTCAGTTCAGGTTCTTTGCCTTGTCTCCAAAAGTTGATGGTGTGCTTGGGAGGACTTATAGGTTGGACTTTGAGAACCCTGCAAAGCCTGGTGTGGCTATGCCTGTTGTTGGTGGGGAAGACAAGTACAAGACTAACTCATTGTTTTCTCCTGATTGTGGTTCTTGTGTCTTCTCAAAGGAAAGTTCATCTGAGAAAGAGATCACCACCCCACAAGTGATGGAATATGGCACCCTTGATTGCACCAAGTTTTCATATGGGTTGGGCATTGTTTGCAGGAGATGA 1017 0.472 MEISKSSVLILLVVFASSLIHAKAYHGLYCGTRGTRCYGKYITCPDECPESETNEPKTKVCHIDCNKPICRAVCRSRKPNCNAPGSGCYDPRFIGGDGRVFYFHGKSNEHFSLVSDSNLQINARFIGHRPAGRSRDYTWIQALGVLFNSKTFSLEATKTPQWDDLEHLKLTYNGNQVALPEGSLSTWQNEEKDVKVERVASKNSVMVTLKDVAEILVNVVPVTKEDDRIHNYQVPSDDCFAHLEVQFRFFALSPKVDGVLGRTYRLDFENPAKPGVAMPVVGGEDKYKTNSLFSPDCGSCVFSKESSSEKEITTPQVMEYGTLDCTKFSYGLGIVCRR 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01057 338 Pfam Root cap 246 302 IPR009646 -
Cca10g01057 338 PANTHER CONSTITUENT OF CELL WALL, PUTATIVE-RELATED 3 338 - -
Cca10g01057 338 PANTHER ROOT CAP DOMAIN-CONTAINING PROTEIN 3 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01057 Cca-Chr10 13056342 13058105 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01057 - - gmx:100803458 600.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01057 10 13056342 13058105 Cca10g01057 10 13056342 13058105 ECH