Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2499 ATGGCTAGCATGCTAACTAGGCTGGTTTGCTTGGCCATTGTGTGCCTGGCACTTGGTGCAACCATTCCCAAGACACAAGCAGAggtgacatgtaatcaagttgTGAGTAACCTGACCCCATGTATTTCCTATGTGGTCTATGGTGGAGCCAAGGTTCCTTCTCAGTGCTGCAATGGGATCAGAAACCTCTATAATCTGGCTCCGACCAAACCAGACCGCCAAGCCGCTTGCAACTGCATAAAGAATGGTGTTAGGAACAGTGGATTCACTTACTCAAAGTTCAATCTCAACCTTGCTGCTAGCCTTCCCAAGAAATGTGGGGTTAACATCCCTTACCAGATAAGCCCCGATACAGACTGTAGCAGGGTGCAGTGA 375 0.464 MASMLTRLVCLAIVCLALGATIPKTQAEVTCNQVVSNLTPCISYVVYGGAKVPSQCCNGIRNLYNLAPTKPDRQAACNCIKNGVRNSGFTYSKFNLNLAASLPKKCGVNIPYQISPDTDCSRVQ 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2499 124 Pfam Protease inhibitor/seed storage/LTP family 31 120 IPR016140 -
Ssu4g2499 124 CDD nsLTP1 29 121 - -
Ssu4g2499 124 SMART aai_6 31 120 IPR016140 -
Ssu4g2499 124 ProSitePatterns Plant lipid transfer proteins signature. 102 123 IPR000528 GO:0006869|GO:0008289
Ssu4g2499 124 Gene3D - 28 124 IPR036312 -
Ssu4g2499 124 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 29 123 IPR036312 -
Ssu4g2499 124 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 10-RELATED 5 122 - -
Ssu4g2499 124 PANTHER - 5 122 IPR000528 GO:0006869|GO:0008289
Ssu4g2499 124 PRINTS Plant phospholipid transfer protein signature 111 122 IPR000528 GO:0006869|GO:0008289
Ssu4g2499 124 PRINTS Plant phospholipid transfer protein signature 93 110 IPR000528 GO:0006869|GO:0008289
Ssu4g2499 124 PRINTS Plant phospholipid transfer protein signature 30 46 IPR000528 GO:0006869|GO:0008289
Ssu4g2499 124 PRINTS Plant phospholipid transfer protein signature 51 65 IPR000528 GO:0006869|GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2499 Ssu-Chr4 63104281 63105073 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2499 1 124 Acyl Lipid Metabolism Gene Families AT2G38540 45.161 1.14e-29 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2499 - - gmx:100793733 205.682
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2499 4 63104281 63105073 Ssu4g2499 4 63104281 63105073 ECH