Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3816 ATGGCTATGGTAGCTCGGCTTGTCTCTTTGGCAATTGTGTTCGCGGTGCTCGTGGCGGTAACCACTGTTCCGAGGGCTGAAGGTGCTGTGACATGTGGTCAGGTTGTGAACAGCCTGTACCCATGCGTTTCCTACCTGATGAATGGTGGCAACATGGTGCCCGGGCAGTGCTGCAATGGGATCAGGAACCTGTATGGCATGGCTACGAACACGCCGGACCGGAGAGCGGTTTGCACCTGCATCAAGCAGGCTGTTAGCAACAGTGGATTCTCCTTCACTAGTTACAATCTCAACCTTGCTGCTGGACTTCCTAAGAAATGTGGGGTTAACATTCCTTATCAGATCAGCCCCAATACTGACTGCAGCAGGGTGCAGTGA 378 0.5317 MAMVARLVSLAIVFAVLVAVTTVPRAEGAVTCGQVVNSLYPCVSYLMNGGNMVPGQCCNGIRNLYGMATNTPDRRAVCTCIKQAVSNSGFSFTSYNLNLAAGLPKKCGVNIPYQISPNTDCSRVQ* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3816 125 PRINTS Plant phospholipid transfer protein signature 112 123 IPR000528 GO:0006869|GO:0008289
Lja3g3816 125 PRINTS Plant phospholipid transfer protein signature 31 47 IPR000528 GO:0006869|GO:0008289
Lja3g3816 125 PRINTS Plant phospholipid transfer protein signature 52 66 IPR000528 GO:0006869|GO:0008289
Lja3g3816 125 PRINTS Plant phospholipid transfer protein signature 94 111 IPR000528 GO:0006869|GO:0008289
Lja3g3816 125 Pfam Protease inhibitor/seed storage/LTP family 32 121 IPR016140 -
Lja3g3816 125 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 10-RELATED 6 123 - -
Lja3g3816 125 PANTHER - 6 123 IPR000528 GO:0006869|GO:0008289
Lja3g3816 125 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 29 124 IPR036312 -
Lja3g3816 125 CDD nsLTP1 30 122 - -
Lja3g3816 125 SMART aai_6 32 121 IPR016140 -
Lja3g3816 125 ProSitePatterns Plant lipid transfer proteins signature. 103 124 IPR000528 GO:0006869|GO:0008289
Lja3g3816 125 Gene3D - 29 125 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3816 Lja-Chr3 75235609 75237323 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3816 1 125 Acyl Lipid Metabolism Gene Families AT2G15050 45.312 1.34e-28 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3816 - - gmx:100793733 170.244