Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01281 ATGGCTAGCTCACTACTTGTGAAGGTTACCTGCTTGGCTGTGATGTGCATTGCTTTGGGCATTCCCTTGGCCAATGCTGCTCTTTCATGTGGGCAGGTGCAAATCAGTGTAGCACCATGCATTGGGTACCTGAGGAGCGCTGGTGGAGCTGTCCCTGCAGCATGCTGCAACGGGGTTCGGAACGTAAATAACCAAGCCAGGACCACCCCTGATCGTCAAGGTGTTTGTAACTGCCTCAAATCATCTGTTTTGCGCTTCCCAGGACTCAATCCTGCAACCATTTCCTCTCTCCCTGGCAAGTGTGGGGTTAACTTGCCCTACAAGATTAGCCCCTCCATTGACTGCAACAAGGGTAAAGTGAGCAGCTTTGGCATGAGGGTTTTATTACACTTGTTGACTTAG 402 0.5075 MASSLLVKVTCLAVMCIALGIPLANAALSCGQVQISVAPCIGYLRSAGGAVPAACCNGVRNVNNQARTTPDRQGVCNCLKSSVLRFPGLNPATISSLPGKCGVNLPYKISPSIDCNKGKVSSFGMRVLLHLLT. 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01281 133 PRINTS Plant phospholipid transfer protein signature 106 117 IPR000528 GO:0006869|GO:0008289
Seca2g01281 133 PRINTS Plant phospholipid transfer protein signature 29 45 IPR000528 GO:0006869|GO:0008289
Seca2g01281 133 PRINTS Plant phospholipid transfer protein signature 71 86 IPR000528 GO:0006869|GO:0008289
Seca2g01281 133 PRINTS Plant phospholipid transfer protein signature 88 105 IPR000528 GO:0006869|GO:0008289
Seca2g01281 133 PRINTS Plant phospholipid transfer protein signature 50 64 IPR000528 GO:0006869|GO:0008289
Seca2g01281 133 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 2-RELATED 7 117 IPR000528 GO:0006869|GO:0008289
Seca2g01281 133 CDD nsLTP1 28 116 - -
Seca2g01281 133 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 27 117 IPR036312 -
Seca2g01281 133 SMART aai_6 30 115 IPR016140 -
Seca2g01281 133 Gene3D - 27 118 IPR036312 -
Seca2g01281 133 FunFam Non-specific lipid-transfer protein 27 119 - -
Seca2g01281 133 Pfam Protease inhibitor/seed storage/LTP family 30 115 IPR016140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01281 Seca-Chr2 20817418 20818366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01281 10 119 Acyl Lipid Metabolism Gene Families AT5G59320 51.351 3.21e-30 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01281 - - gmx:100306062 169.474