Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00893 ATGGGCGTTGAACAGATAATCTGGAGGAGGAATAAAAAAAGAGCTTTTGATGGTACACACAGCAGTGTAGATAGCCCTTCATTGGTTCAAAACAATAGTAGGAAAATAATGTTTCCTCAATCCGATGGGGTTTTTCATGATTCCAAAGTTGATGTTTATATGCCAAAACAGACTTCTTTGTGTGTTTTGATGCTACATTACACAGAAAATGGTCTCTTTCCTCAAGCACAGACTACATGGGAGCAGCTCCTATATAGTTCTTTTGTACCTTCTTTTGAATTTATTTCAAGACTATTTGATGCTTATGCAAAACATGGAAAATTCGATGAAGTGGTCAATATTCTACGCTATGTGGATATGAGGAATTTCAGTATATTACCTAATGTTTACTCGTTGGCTATTTCTTGTTTTGGAAGAGAAGGACAGCTTGAGTTAATGGAAGATATGGCAAAGGAAATGGCTTCAAGAGGTGTTCATATCTCTTCTAAAACTGCTAATGCTTTTGTTTTGTATTATAGTATTTTTGGTTCTTTGAAAGACATGGAGAATGCTTATGGCCGCCTAAAGAAATCGAGATTTATGATAGAGAGGGAAGTGATTCGGGCAATGGCCTCTGCATATACAAGGGACAGACAATTCTATGAATTGGGTGAGTTCCTAAGAGATGTTGGTCTAGGTAGGAAAGATGTCGGAAATCTTCTATGGAACCTTTTGTTACTTTCTTATGCTGCAAATTTCAAGATGAAAAGCTTGCAGAAAGAATTTCTGCAAATGTTGGAATCCGGGTTCCGTCCTGATATTACAACCTTTAATATTCGTGCTTTAGCCTTCTCAAGAATGGCTTTGTTCTGGGATCTTCACCTTAGCATTGAACATATGGAACGTGAGAAGGTCATTCCTGATCTAGTGACTTTTGGGTGTGTAGTTGATGCATACTTGGAGAGAAGGCTTGGAAGGAACTTGGACTTTGTTCTAAACAAAATGAACGCGGATGATTCTCCAATGTTGTTAACAGATCGGTTTGTGTATGAGGCCTTAGGTAAAGGGGACTTTCAAATGAGTTCTGAAGCATTTTTGGAGTTTAAAACACAAAGGAAATGGACTTACCGTGCTTTGATACAAAAGTATCTCAAGAAACATTACAGAAGGAACCAGATATTTTGGAACTACTAA 1173 0.376 MGVEQIIWRRNKKRAFDGTHSSVDSPSLVQNNSRKIMFPQSDGVFHDSKVDVYMPKQTSLCVLMLHYTENGLFPQAQTTWEQLLYSSFVPSFEFISRLFDAYAKHGKFDEVVNILRYVDMRNFSILPNVYSLAISCFGREGQLELMEDMAKEMASRGVHISSKTANAFVLYYSIFGSLKDMENAYGRLKKSRFMIEREVIRAMASAYTRDRQFYELGEFLRDVGLGRKDVGNLLWNLLLLSYAANFKMKSLQKEFLQMLESGFRPDITTFNIRALAFSRMALFWDLHLSIEHMEREKVIPDLVTFGCVVDAYLERRLGRNLDFVLNKMNADDSPMLLTDRFVYEALGKGDFQMSSEAFLEFKTQRKWTYRALIQKYLKKHYRRNQIFWNY 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00893 390 NCBIfam pentatricopeptide repeat 129 160 IPR002885 -
Vian9g00893 390 Gene3D Tetratricopeptide repeat domain 33 224 IPR011990 GO:0005515
Vian9g00893 390 PANTHER OS08G0520200 PROTEIN 7 385 - -
Vian9g00893 390 Pfam PPR repeat 98 116 IPR002885 -
Vian9g00893 390 Pfam PPR repeat 130 158 IPR002885 -
Vian9g00893 390 Gene3D Tetratricopeptide repeat domain 226 386 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00893 55 379 Glycosyltransferase AT1G05670 19.345 5.44e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00893 - - gmx:100818684 632.484