Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0306 ATGGCTAGTTTGCAAACTAGGGTTTTCTTGATGGCCCTTCTGTGCCTGCTGGCTCTTGGTGCAACCATTATTCCAATGGCACAAGGGGAAGTGTCATGTGGCCAAGTTGTGAGTAACCTGACCCCATGCATCTCCTATGTGCTATATGGTGGAGCCACGGTTCCTGCACAGTGCTGCAATGGGATCAGGAACCTCTATGGCATGGCTCAGACCAAACCAGATCGCCAAGCTGTTTGCAACTGCATCAAGAACGCTGTTAGGAACAGTGGCTTCACCTACTCTCACTTCAATCTCAACCTTGCTGCTAACCTTCCCAAGAACTGTGGGGTTAACATTCCCTACCAGATCAGCCCCGACACAGACTGCACCAGGGTGCAGTGA 381 0.5118 MASLQTRVFLMALLCLLALGATIIPMAQGEVSCGQVVSNLTPCISYVLYGGATVPAQCCNGIRNLYGMAQTKPDRQAVCNCIKNAVRNSGFTYSHFNLNLAANLPKNCGVNIPYQISPDTDCTRVQ* 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0306 126 Pfam Protease inhibitor/seed storage/LTP family 33 122 IPR016140 -
Gso3g0306 126 SMART aai_6 33 122 IPR016140 -
Gso3g0306 126 CDD nsLTP1 31 123 - -
Gso3g0306 126 PANTHER - 5 124 IPR000528 GO:0006869|GO:0008289
Gso3g0306 126 ProSitePatterns Plant lipid transfer proteins signature. 104 125 IPR000528 GO:0006869|GO:0008289
Gso3g0306 126 PRINTS Plant phospholipid transfer protein signature 32 48 IPR000528 GO:0006869|GO:0008289
Gso3g0306 126 PRINTS Plant phospholipid transfer protein signature 53 67 IPR000528 GO:0006869|GO:0008289
Gso3g0306 126 PRINTS Plant phospholipid transfer protein signature 74 89 IPR000528 GO:0006869|GO:0008289
Gso3g0306 126 PRINTS Plant phospholipid transfer protein signature 113 124 IPR000528 GO:0006869|GO:0008289
Gso3g0306 126 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 10-RELATED 5 124 - -
Gso3g0306 126 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 31 125 IPR036312 -
Gso3g0306 126 Gene3D - 30 126 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0306 Gso-Chr3 4559051 4560397 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0306 10 126 Acyl Lipid Metabolism Gene Families AT2G38540 48.333 3.30e-29 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0306 - - gmx:100793733 254.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1126 1 45720795 45722404 Gso3g0306 3 4559051 4560397 GST