Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1028 ATGGGTTACTCAACTATGACCATTAGGTTTGTTTGTTTGGCAATTGTTTGCCTGGTGACTTTTGGTCCTAAGGCTGAAGCTGCTGTGACATGTGGTCAAGTAGTGAACAACTTAACACCTTGTGTTTCTTACATAATTTATGGTGGGAACGCTGTGCCTGTGCAGTGTTGTAATGGAGTGAGAAGCCTTAATAGCATGGCTCAAACCACCCCAGATCGTAGAGCTGTTTGTAACTGCATTAAGAATGCTGTTACCTCAAGTGGTTTCACTTACACTAGATTCAATCTTGACATTGTTGCTGGTCTTCCAAGTAAATGTGGGGTTAACATTCCTTACCAGATCAGTCCTAATACCAACTGTAACAGTGTGCACTGA 375 0.4213 MGYSTMTIRFVCLAIVCLVTFGPKAEAAVTCGQVVNNLTPCVSYIIYGGNAVPVQCCNGVRSLNSMAQTTPDRRAVCNCIKNAVTSSGFTYTRFNLDIVAGLPSKCGVNIPYQISPNTNCNSVH* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1028 124 CDD nsLTP1 29 121 - -
Tpr4g1028 124 Pfam Protease inhibitor/seed storage/LTP family 31 120 IPR016140 -
Tpr4g1028 124 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 28 123 IPR036312 -
Tpr4g1028 124 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 10-RELATED 9 122 - -
Tpr4g1028 124 SMART aai_6 31 120 IPR016140 -
Tpr4g1028 124 ProSitePatterns Plant lipid transfer proteins signature. 102 123 IPR000528 GO:0006869|GO:0008289
Tpr4g1028 124 Gene3D - 28 124 IPR036312 -
Tpr4g1028 124 PANTHER - 9 122 IPR000528 GO:0006869|GO:0008289
Tpr4g1028 124 PRINTS Plant phospholipid transfer protein signature 30 46 IPR000528 GO:0006869|GO:0008289
Tpr4g1028 124 PRINTS Plant phospholipid transfer protein signature 51 65 IPR000528 GO:0006869|GO:0008289
Tpr4g1028 124 PRINTS Plant phospholipid transfer protein signature 93 110 IPR000528 GO:0006869|GO:0008289
Tpr4g1028 124 PRINTS Plant phospholipid transfer protein signature 111 122 IPR000528 GO:0006869|GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1028 Tpr-Chr4 9900858 9901951 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1028 8 124 Acyl Lipid Metabolism Gene Families AT2G38540 44.915 2.15e-32 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1028 - - gmx:100499726 168.703