Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02017 ATGGCTAGCTTGGTGCTAACTAGGGTTGTTTGCTTGGCCATTGTGTGGCTTGCACTTGGTGCAACCATAGTTCCCAAGGCACAAGGAGATGTGACATGTGGTCAAGTTGTGAATAACTTGACACCATGCATTTCCTATGTGGTTTATGGTGGAGCCACTGTTCCTTCTCAGTGCTGCAATGGGATCAAGAACCTCTATAGCTTGGCTCAGACCAAACCTGATCGTCAAGCCGTTTGCAACTGCATAAAGGGTAGTGTTAGGAACAGTGGTTTTACCTACTCAAATTTTAACCTCAACCTTGCTGCTGGCCTTCCCAAGAAATGTGGGGTTAACATCCCTTACCAGATCAGCCCCAACACAGATTGTAGCAGGGTGCAGTGA 381 0.4724 MASLVLTRVVCLAIVWLALGATIVPKAQGDVTCGQVVNNLTPCISYVVYGGATVPSQCCNGIKNLYSLAQTKPDRQAVCNCIKGSVRNSGFTYSNFNLNLAAGLPKKCGVNIPYQISPNTDCSRVQ 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02017 126 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 31 125 IPR036312 -
Cca01g02017 126 CDD nsLTP1 31 123 - -
Cca01g02017 126 SMART aai_6 33 122 IPR016140 -
Cca01g02017 126 PANTHER - 6 124 IPR000528 GO:0006869|GO:0008289
Cca01g02017 126 ProSitePatterns Plant lipid transfer proteins signature. 104 125 IPR000528 GO:0006869|GO:0008289
Cca01g02017 126 PRINTS Plant phospholipid transfer protein signature 32 48 IPR000528 GO:0006869|GO:0008289
Cca01g02017 126 PRINTS Plant phospholipid transfer protein signature 53 67 IPR000528 GO:0006869|GO:0008289
Cca01g02017 126 PRINTS Plant phospholipid transfer protein signature 95 112 IPR000528 GO:0006869|GO:0008289
Cca01g02017 126 PRINTS Plant phospholipid transfer protein signature 113 124 IPR000528 GO:0006869|GO:0008289
Cca01g02017 126 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 10-RELATED 6 124 - -
Cca01g02017 126 Pfam Protease inhibitor/seed storage/LTP family 33 122 IPR016140 -
Cca01g02017 126 Gene3D - 30 126 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02017 Cca-Chr1 47084453 47085965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02017 6 126 Acyl Lipid Metabolism Gene Families AT2G38540 45.455 1.92e-30 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02017 - - gmx:100793733 209.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02017 01 47084453 47085965 Cca01g02017 01 47084453 47085965 ECH