Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0853 ATGGCTAGCTTGCAAATTAGGCTTGTTTGTTTGGCAATTGTGTGCTTGGCACTTGGCGCAACCATTCCCAAGGCCCAAGGAGCAGTGACATGTGGTCAAGTTGTGAACAACTTGACCCCATGCATTTCCTATGTGGTTTATGGTGGAAACATGGTTCCTGCCCAATGCTGCAGTGGTGTCAAGAACCTCAACAGCATGGCTCGAACCACACCAGACCGCCAAACCGTTTGCAACTGCATAAAGAATGCTGTTAGCAACAGTGGTTTCACTTACACTAGTTTCAATCTTAATCTTGCTGCTGGCCTTCCCAGGAAATGTGGTGTTAACATTCCTTACCAGATCAGTCCCAATACAGATTGTAGCAGGGTGCAGTGA 375 0.472 MASLQIRLVCLAIVCLALGATIPKAQGAVTCGQVVNNLTPCISYVVYGGNMVPAQCCSGVKNLNSMARTTPDRQTVCNCIKNAVSNSGFTYTSFNLNLAAGLPRKCGVNIPYQISPNTDCSRVQ* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0853 124 SMART aai_6 31 120 IPR016140 -
Apr10g0853 124 CDD nsLTP1 29 121 - -
Apr10g0853 124 ProSitePatterns Plant lipid transfer proteins signature. 102 123 IPR000528 GO:0006869|GO:0008289
Apr10g0853 124 Gene3D - 28 124 IPR036312 -
Apr10g0853 124 PANTHER - 7 122 IPR000528 GO:0006869|GO:0008289
Apr10g0853 124 Pfam Protease inhibitor/seed storage/LTP family 31 120 IPR016140 -
Apr10g0853 124 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 10-RELATED 7 122 - -
Apr10g0853 124 PRINTS Plant phospholipid transfer protein signature 30 46 IPR000528 GO:0006869|GO:0008289
Apr10g0853 124 PRINTS Plant phospholipid transfer protein signature 51 65 IPR000528 GO:0006869|GO:0008289
Apr10g0853 124 PRINTS Plant phospholipid transfer protein signature 93 110 IPR000528 GO:0006869|GO:0008289
Apr10g0853 124 PRINTS Plant phospholipid transfer protein signature 111 122 IPR000528 GO:0006869|GO:0008289
Apr10g0853 124 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 28 123 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0853 Apr-Chr10 20877082 20877867 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0853 6 124 Acyl Lipid Metabolism Gene Families AT2G38540 48.739 3.21e-33 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0853 - - gmx:100793733 195.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0853 10 20877082 20877867 Apr10g0853 10 20877082 20877867 ECH