Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2502 ATGGAAATCAATTCTCTGGCACTCCTCTCTTGCCGTATGCCCATTCTGCTAAAGGACTCTCGCAGCGGAGCCTCTCAACAACACAACAAGATGATCTGGTGGCAGAATGAAGAAGGGGTTTTCGGTGGTATGGACAGCAGTGTAGATTGCTCTTCATTGGTTCAAAACTCCAGTAGGAAAAGAATGTTTCATCAATCTGATGGGGGTTTTCATGATATGAAAGTTGATGGTTATATACCAAAACAGTCCACTTTGTGTGTATTGATGCTACATTACACAGAGAGTGGCCTCTTTCCTCAAGCAGAGACTACATGGGAGCAGCTCCTGAATAGTTCTTTTGTgccttctcttttattcatttcaaaattatttgatgctTATGGAAAACATGGGAAATGTGATGAAGTGATCGATATCCTACGGTATGTGGATATGAGGAATTTCAGTATATTACCTGATGTTTACTCATTGGCTATCTCTTGTTTTGGAAGAGAAGGACAGCTTGAGTTGATGGAAGATATGGCAAAGGAAATGGCTTCAAGAGGTATCCATATCTGTTCTAGAACTGCTAATGCTTTCCTTttgtattatagtatttttggttctttgaaaGAGATGGAGAACGCGTATGGCCGCCTTAAGAAATCTAGATTTGTGGTAGAAAAGGAAGTGATTCGGGCCGTGGCCTCTGCATATATGAAGGAGAGAAAATTCTATGAATTGGGTGAATTCCTAAGAGATGTGGGTCTAGGTAGGAAAAATGTTGGAAACCTTTTATGGAACCTTTTGTTACTGTCTTATGCTGccaatttcaaaatgaaaagctTGCAGAGAGAATTTCTTAGAATGGTGGAATCTGGGTTCCGTCCTGATATTACTACCTTCAATATCCGTGCTCTTGCCTTCTCAAGGATGGCTTTGTTCTGGGACCTCCACCTTAGCATTGAACATATGGAACATGAGAAGGTCATTCCTGATCTAGTGACTTTTGGGTGTGTGGTTGATGCATACTTGGATAGAAGGCTCGGAAGAAACTTGGACTTTGCTCTAAACAAAATGAACTTGGATGACTCTCCACAGTTGTTAACAGATCCGTTTGCGTATGAGGCCTTAGGTAAAGGGCACTTTCACATGAGTTCTGAAGCATTTTTTGAGTTCAAGGCACAAAGGCCATGGACTTACCGTGTTTTGATACAAAAATATCTCAAGAAACATTATCGAAGGGACCAGATATTTTGGAATTACTAA 1248 0.387 MEINSLALLSCRMPILLKDSRSGASQQHNKMIWWQNEEGVFGGMDSSVDCSSLVQNSSRKRMFHQSDGGFHDMKVDGYIPKQSTLCVLMLHYTESGLFPQAETTWEQLLNSSFVPSLLFISKLFDAYGKHGKCDEVIDILRYVDMRNFSILPDVYSLAISCFGREGQLELMEDMAKEMASRGIHICSRTANAFLLYYSIFGSLKEMENAYGRLKKSRFVVEKEVIRAVASAYMKERKFYELGEFLRDVGLGRKNVGNLLWNLLLLSYAANFKMKSLQREFLRMVESGFRPDITTFNIRALAFSRMALFWDLHLSIEHMEHEKVIPDLVTFGCVVDAYLDRRLGRNLDFALNKMNLDDSPQLLTDPFAYEALGKGHFHMSSEAFFEFKAQRPWTYRVLIQKYLKKHYRRDQIFWNY 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2502 415 PANTHER OS08G0520200 PROTEIN 11 415 - -
Ssu4g2502 415 Pfam PPR repeat 123 141 IPR002885 -
Ssu4g2502 415 Pfam PPR repeat 154 183 IPR002885 -
Ssu4g2502 415 TIGRFAM PPR: pentatricopeptide repeat domain 154 184 IPR002885 -
Ssu4g2502 415 Gene3D Tetratricopeptide repeat domain 255 354 IPR011990 GO:0005515
Ssu4g2502 415 Gene3D Tetratricopeptide repeat domain 47 254 IPR011990 GO:0005515
Ssu4g2502 415 PANTHER OS08G0520200 PROTEIN 11 415 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2502 42 404 Glycosyltransferase AT1G05670 21.505 2.86e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2502 - - gmx:100818684 724.161