Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00269 CCCAAACACACTGAAAGTGAAAAACAGAAACACTTAATAAAGCTTGTTGAAAACCCTGATCTGTTCCCAATGGCGAGTCTCAAGTTAGCATGCATGGTGGCAGTGGTGTGCATGATTGTAGTGTGCGCACCCATGGCGCACGCTGCCATCACATGCGGGCAGGTGGTCAACTTGCTCCGTCCATGCATCAACTACATTAAGTCTGGAGGACCTGTGCCTGGCCCCTGCTGCAACGGTGTCAGGACCCTCAAATCCGCCTCCAAGACCACCTCCGACCGCCAGACCGCCTGCAACTGCCTCAAAGCAGCCGCCAGCACCATTAGCGGCTACAACAACGGTTACGCCGCCTCCCTCCCCACCAAATGCGGCGTCAACATCCCCTACACCATCAGCCCCAACACTAACTGTGCCAATTTGCAAGAAAGTGTGGTTTCTTTGGCCATTTTGTGCCTTGTTCTTGGTGCAACAACAATCATTCCCAAGGCACAAGCACAGGTGACATGTGGCCAAGTTGTGAGTAACCTGACCCCATGCATTTCCTATGTGGTGTATGGTGGAGCAACAGTTCCTGGACAGTGCTGCAATGGGATCAGGAACCTTAATAGTATGGCTAGGACCAAACAAGATCGCCAAGCAGTTTGCAATTGCATAAAGAATGGTGTTAGGAACAGTGGCTTCACTTACTCAAAGTACAATCTCAACCTTGCTGCTAGCCTTCCCAAGAAATGTAGAGTCAACATTCCCTACCAGATCAGCCCTGATACTGACTGTGCCGGGGTGCAGTGAGGTTGCTGCATTGTTTAATTACGTTAGTAGTTTTAGAATAAGAAGCCACGTGACGACATGACATGGGAATGGCTAGAAAGTGCTTCTTAAACGCTTGTACTAGTGCTCTTGTATGTCTGTGGTTATAGTGTGTAACTGAGGTCGCAGTGCTTGCTTGTGTAGGCATTAGGAGAAGATAGGAAGTTAAAAGGAAGAAAAGGTTTTGTGTAAGCTGTCGTTGTTCCATATTAATGATATGAGCAGTTTGGGAATATAATTTGAGAAGTTCATTAATTAGATTTGATTAATAATTGTCGTACCTCGTGAGTCATATATCCTTTTTTTGGTGTCACGTTGTGTGA 1127 0.4703 MASLKLACMVAVVCMIVVCAPMAHAAITCGQVVNLLRPCINYIKSGGPVPGPCCNGVRTLKSASKTTSDRQTACNCLKAAASTISGYNNGYAASLPTKCGVNIPYTISPNTNCANLQESVVSLAILCLVLGATTIIPKAQAQVTCGQVVSNLTPCISYVVYGGATVPGQCCNGIRNLNSMARTKQDRQAVCNCIKNGVRNSGFTYSKYNLNLAASLPKKCRVNIPYQISPDTDCAGVQ 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00269 238 CDD nsLTP1 143 234 - -
Pste6g00269 238 ProSitePatterns Plant lipid transfer proteins signature. 95 116 IPR000528 GO:0006869|GO:0008289
Pste6g00269 238 SMART aai_6 29 113 IPR016140 -
Pste6g00269 238 SMART aai_6 145 234 IPR016140 -
Pste6g00269 238 PRINTS Plant phospholipid transfer protein signature 86 103 IPR000528 GO:0006869|GO:0008289
Pste6g00269 238 PRINTS Plant phospholipid transfer protein signature 48 62 IPR000528 GO:0006869|GO:0008289
Pste6g00269 238 PRINTS Plant phospholipid transfer protein signature 69 84 IPR000528 GO:0006869|GO:0008289
Pste6g00269 238 PRINTS Plant phospholipid transfer protein signature 104 115 IPR000528 GO:0006869|GO:0008289
Pste6g00269 238 PRINTS Plant phospholipid transfer protein signature 28 44 IPR000528 GO:0006869|GO:0008289
Pste6g00269 238 CDD nsLTP1 27 113 - -
Pste6g00269 238 Pfam Protease inhibitor/seed storage/LTP family 29 113 IPR016140 -
Pste6g00269 238 Pfam Protease inhibitor/seed storage/LTP family 145 234 IPR016140 -
Pste6g00269 238 Gene3D - 26 116 IPR036312 -
Pste6g00269 238 Gene3D - 142 237 IPR036312 -
Pste6g00269 238 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 27 116 IPR036312 -
Pste6g00269 238 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 143 237 IPR036312 -
Pste6g00269 238 ProSitePatterns Plant lipid transfer proteins signature. 216 237 IPR000528 GO:0006869|GO:0008289
Pste6g00269 238 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 2-RELATED 5 114 IPR000528 GO:0006869|GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00269 Pste-Chr6 886294 892378 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00269 127 238 Acyl Lipid Metabolism Gene Families AT5G59320 42.857 6.15e-22 85.9