Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01297 ATGGGTTACTCAACTGTGATGACTAAGGTTGTCTGTTTGGCAATTGTGTGCCTTGTGAGTTTTGGTCCCAAGGCTGGAGAAGCTGTGACATGTGGTCAAGTTGTGAACGGCTTAATGCCATGTGTTTCTTACATAATGAATGGTGGGAATGTGCCTGAGAGGTGTTGTAATGGAATTAGGGGTCTTAATACCATGGCTCAAACCCCTACTGATCGTAGAGCTGTTTGTACCTGCATTAAGAATGCTGTTACCTCAAGTGGTTTCTCCTACTCTAACACCAATCTTAACAATGCTGCTGGCCTTCCAACCAAATGCGGGGTTAACATTCCTTACCGTATCAGCCCCAATACCGACTGTAAAAGTGTGAACTGA 372 0.4462 MGYSTVMTKVVCLAIVCLVSFGPKAGEAVTCGQVVNGLMPCVSYIMNGGNVPERCCNGIRGLNTMAQTPTDRRAVCTCIKNAVTSSGFSYSNTNLNNAAGLPTKCGVNIPYRISPNTDCKSVN 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01297 123 ProSitePatterns Plant lipid transfer proteins signature. 101 122 IPR000528 GO:0006869|GO:0008289
Vivi5g01297 123 CDD nsLTP1 29 120 - -
Vivi5g01297 123 SMART aai_6 31 119 IPR016140 -
Vivi5g01297 123 PRINTS Plant phospholipid transfer protein signature 50 64 IPR000528 GO:0006869|GO:0008289
Vivi5g01297 123 PRINTS Plant phospholipid transfer protein signature 30 46 IPR000528 GO:0006869|GO:0008289
Vivi5g01297 123 PRINTS Plant phospholipid transfer protein signature 110 121 IPR000528 GO:0006869|GO:0008289
Vivi5g01297 123 PRINTS Plant phospholipid transfer protein signature 92 109 IPR000528 GO:0006869|GO:0008289
Vivi5g01297 123 Pfam Protease inhibitor/seed storage/LTP family 31 119 IPR016140 -
Vivi5g01297 123 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 29 121 IPR036312 -
Vivi5g01297 123 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 2-RELATED 10 120 IPR000528 GO:0006869|GO:0008289
Vivi5g01297 123 Gene3D - 28 123 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01297 Vivi-Chr5 35144160 35145205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01297 28 121 Acyl Lipid Metabolism Gene Families AT3G08770 50.000 2.94e-29 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01297 - - pvy:116122969 156.762