Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2199 ATGATGAAGCGGCTGTTGGGTGGGCCCGGAACGATTAGCGGGTTCCTGTTGAGGCTAGGACAATGCGCGTTTGGCGCCGCTTCAATTGCCCTTATGGTCACTGCTTTTGGCTTCTCTAGCTACACCGCTTTCTGCTATTTAATTGCATCAATGGGACTTCAAGTGCTCTGGAGCTTTGGACTTGCATGTCTTGATATTTATGCCTTGAGGAGAAAGAGAGACCTACAAAATCCTATTCTAGTCAGCCTATTTGTTGTAGGCGATTGGGTAACGGCGACTTTATCACTGGCAGCTGCATGCTCATCAGCAGGAATTGTAGTATTATACGCAAGAGACCTGAATATGTGTGTGACTAATAAGAATCTCGCTTGCAACAGGTACCAGATTTCTGTAGCCATGGCTTTTGTCACCTGGGTTCTTACGGCAATGTCATCGCATGTGATGTTTTGGATCTTGGCCTCAGTCTAG 468 0.4679 MMKRLLGGPGTISGFLLRLGQCAFGAASIALMVTAFGFSSYTAFCYLIASMGLQVLWSFGLACLDIYALRRKRDLQNPILVSLFVVGDWVTATLSLAAACSSAGIVVLYARDLNMCVTNKNLACNRYQISVAMAFVTWVLTAMSSHVMFWILASV 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2199 155 Pfam Casparian strip membrane protein domain 9 140 IPR006702 -
Ssu4g2199 155 PANTHER CASP-LIKE PROTEIN 5B2 2 155 - -
Ssu4g2199 155 PANTHER CASP-LIKE PROTEIN 5B3 2 155 IPR045009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2199 Ssu-Chr4 51231923 51235402 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2199 - - ccaj:109817576 294.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2199 4 51231923 51235402 Ssu4g2199 4 51231923 51235402 ECH