Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01710 ATGTCGATGCAGATTGAATTGATCGAGCTTAACACCGGAGCCAAGATCCCTTCCCTGGGCTTGGGAACGTGGCAGTCCGACCCTGGCCTCGTCGCTCAAGCCGTCGCTGCCGCCATCAAGGTTGGTTACCGCCACATTGATTGTGCTCAAGTCTATGGCAACGAGAAGGAGATTGGCTCTATCTTGAAGAAGCTGTTTGGGGAGGGTGTAGTGAAGCGCGAGGATTTGTGGATTACATCTAAACTCTGGAATACTGATCATGCTCCCGAAGATGTACCGCTTGCATTGGACAGGACTTTGAAAGATTTGCAGCTTGATTATGTAGATTTGTATCTTATCCACTGGCCTGCTCCAATGAAAAAAGGATCAGTTGGCTTTAAGCCTGAAAATCTTGTGCAACCAAACATACCTAGCACATGGAAGGCAATGGAAGCACTCTATGACTCTGGCAAGGCCCGGGCTATAGGTGTAAGCAATTTTTCCACCAAGAAGCTGGCGGATTTGCTGGAAGTTGCTCGAATTCCTCCTGCTGTCAACCAGGTTGAGTGCCATCCTTCGTGGCAGCAGGACAAGCTGCAGGCTTTCTGCAAATCCAAAGGTGTCCACCTCTCTGGATATTCACCTTTGGGTTCCCCTGGAACAACCTGGGTCAAAAGTGAAGTCCTTAAGCAACCAATTATAAATATGATTGCAGAGAAACTAGGCAAGACTCCTGCACAAGTAGCTCTTCGCTGGGGACTGCAAATGGGCCATAGTGTGCTCCCCAAGAGTACAAGTGAAGCAAGGATAAAGGAAAATTTTGATGTTTTTGGCTGGTCTATACCAGAGGACTTGTTCGCTAAATTTTCTGAGATTCAACAGGCAAGACTACTCAGGGGTACCTCATTCGTCCATGAAACTTATGGTGGCTACAGAACTATTGAGGAATTATGGGATGGTGAAATCTGA 948 0.4736 MSMQIELIELNTGAKIPSLGLGTWQSDPGLVAQAVAAAIKVGYRHIDCAQVYGNEKEIGSILKKLFGEGVVKREDLWITSKLWNTDHAPEDVPLALDRTLKDLQLDYVDLYLIHWPAPMKKGSVGFKPENLVQPNIPSTWKAMEALYDSGKARAIGVSNFSTKKLADLLEVARIPPAVNQVECHPSWQQDKLQAFCKSKGVHLSGYSPLGSPGTTWVKSEVLKQPIINMIAEKLGKTPAQVALRWGLQMGHSVLPKSTSEARIKENFDVFGWSIPEDLFAKFSEIQQARLLRGTSFVHETYGGYRTIEELWDGEI 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01710 315 Gene3D - 5 315 IPR036812 -
Cca01g01710 315 ProSitePatterns Aldo/keto reductase family signature 2. 143 160 IPR018170 GO:0016491
Cca01g01710 315 PANTHER ALDO-KETO REDUCTASE FAMILY 4 MEMBER C9-LIKE 3 314 - -
Cca01g01710 315 CDD AKR_AKR4C1-15 9 292 IPR044498 GO:0016491
Cca01g01710 315 PANTHER ALDO/KETO REDUCTASE 3 314 - -
Cca01g01710 315 SUPERFAMILY NAD(P)-linked oxidoreductase 9 288 IPR036812 -
Cca01g01710 315 ProSitePatterns Aldo/keto reductase family signature 1. 42 59 IPR018170 GO:0016491
Cca01g01710 315 PRINTS Aldo-keto reductase signature 38 62 IPR020471 GO:0016491
Cca01g01710 315 PRINTS Aldo-keto reductase signature 98 116 IPR020471 GO:0016491
Cca01g01710 315 PRINTS Aldo-keto reductase signature 143 160 IPR020471 GO:0016491
Cca01g01710 315 PRINTS Aldo-keto reductase signature 177 206 IPR020471 GO:0016491
Cca01g01710 315 PRINTS Aldo-keto reductase signature 221 245 IPR020471 GO:0016491
Cca01g01710 315 PIRSF AKR 1 308 IPR020471 GO:0016491
Cca01g01710 315 Pfam Aldo/keto reductase family 19 285 IPR023210 -
Cca01g01710 315 ProSitePatterns Aldo/keto reductase family putative active site signature. 254 269 IPR018170 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01710 Cca-Chr1 39810707 39816457 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01710 K00002 - gmx:100781137 592.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01710 01 39810707 39816457 Cca01g01710 01 39810707 39816457 ECH