Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01708 ATGATGAAGCGCTTGTTGGGTGGGCCCGGAACCATTAGCGGCTTTCTCTTGAGGTTCGGCCAATGCGCCTTCGGTGCGGCTTCAATTTCACTCATGGTCACTGCTCTTGGCTTCTCTAGCTACACCGCTTTCTGCTATTTAATTGCATCAATGGGACTTCAAGTACTCTGGAGCTTTGGTCTTGCATGTCTTGATATTTATGCCTTGAGGAGAAAAAGAGACTTACAAAATCCTATTCTTGTCAGCCTGTTTGTTGTAGGTGATTGGGTAACGGCAACTTTATCACTGGCAGCTGCATGCTCATCAGCAGGGATTGTAGTATTATATGCCAGAGACCTGAACATGTGTGTGACAAATAAGAACCATCTCGCTTGCAACAGGTACCAGATTTCTGTAGCCATGGCTTTTGTGACCTGGGTTCTTACAGCAATGTCATCGCATGTGATGTTTTGGATCTTGGCCTCGGTCTAG 471 0.4628 MMKRLLGGPGTISGFLLRFGQCAFGAASISLMVTALGFSSYTAFCYLIASMGLQVLWSFGLACLDIYALRRKRDLQNPILVSLFVVGDWVTATLSLAAACSSAGIVVLYARDLNMCVTNKNHLACNRYQISVAMAFVTWVLTAMSSHVMFWILASV 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01708 156 PANTHER CASP-LIKE PROTEIN 5B2 2 156 - -
Cca01g01708 156 Pfam Casparian strip membrane protein domain 9 141 IPR006702 -
Cca01g01708 156 PANTHER CASP-LIKE PROTEIN 5B3 2 156 IPR045009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01708 Cca-Chr1 39666327 39669944 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01708 - - ccaj:109817576 306.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01708 01 39666327 39669944 Cca01g01708 01 39666327 39669944 ECH