Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00043 ATGTCGAACGAGATTCGATTCTTCGAACTCAACACCGGAGCCAAGATTCCTTCCGTTGGTTTAGGAACTTGGCAGTCCGATCCTGGCCTCGTCGGTGAAGCTGTTGCTGCTGCCATTAAGGTTGGTTACCGCCACATTGATTGTGCTCAAATCTATGGCAATGAGAAGGAGATTGGCGCTGTGTTGAAGAAGCTGTTCGATGAGGGTGTTGTGATGCGTGAGGATTTGTGGATTACCTCTAAACTCTGGAATACCGATCATGCTTCGGAAGATGTACCGTTAGCATTGGACAGGACTTTGAGAGACTTGCAGCTTCATTATGTAGATTTATATCTTATCCACTGGCCTGCACCAATGAAGAAAGGATCAGTGGGCTTTAAGCCTGAAAATCTTGTACCACCTGACATACCAAGCACATGGAGGGCAATGGAAGCACTCTATGACTCTGGCAAGGCACGAGCTATAGGTGTAAGCAATTTCTCCTCCAAGAAGCTGGGGGATTTGCTGGAGGTTGCTCGCATTCCTCCTGCTGTCAACCAGGTGGAGTGTCATCCGTCCTGGCAGCAGGACAAGCTGCAGGATTTCTGCAAATCCAAAGGTGTCCACCTCTCTGGGTATTCACCTTTGGGTTCCCCTGGAACAACCTGGCTTAAAAGTGATGTCCTTAAGCATCCAGTTCTAAATATGATTGCGGAGAAACTAGGCAAGACTCCGGCTCAGGTAGCTCTTCACTGGGGACTGCAAATGGGCCATAGTGTGCTTCCCAAGAGTACAAATGAAGCAAGGATAAAGGAAAATTTTGATGTTTTTGACTGGTCTATACCTGAGGACTTATTTGCTAAATTCTCTGAGATTCAACAGGCAAGATTGGTCAGGGGTACCACATTCATCCATGAAACTTACGGTATCTATAGATCTCTTGAGGAATTTTGGGATGGTGAAATATGA 948 0.4652 MSNEIRFFELNTGAKIPSVGLGTWQSDPGLVGEAVAAAIKVGYRHIDCAQIYGNEKEIGAVLKKLFDEGVVMREDLWITSKLWNTDHASEDVPLALDRTLRDLQLHYVDLYLIHWPAPMKKGSVGFKPENLVPPDIPSTWRAMEALYDSGKARAIGVSNFSSKKLGDLLEVARIPPAVNQVECHPSWQQDKLQDFCKSKGVHLSGYSPLGSPGTTWLKSDVLKHPVLNMIAEKLGKTPAQVALHWGLQMGHSVLPKSTNEARIKENFDVFDWSIPEDLFAKFSEIQQARLVRGTTFIHETYGIYRSLEEFWDGEI* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00043 315 FunFam NADPH-dependent aldo-keto reductase, chloroplastic 5 315 - -
Rops4g00043 315 Pfam Aldo/keto reductase family 20 285 IPR023210 -
Rops4g00043 315 PRINTS Aldo-keto reductase signature 143 160 IPR020471 GO:0016491
Rops4g00043 315 PRINTS Aldo-keto reductase signature 98 116 IPR020471 GO:0016491
Rops4g00043 315 PRINTS Aldo-keto reductase signature 38 62 IPR020471 GO:0016491
Rops4g00043 315 PRINTS Aldo-keto reductase signature 177 206 IPR020471 GO:0016491
Rops4g00043 315 PRINTS Aldo-keto reductase signature 221 245 IPR020471 GO:0016491
Rops4g00043 315 ProSitePatterns Aldo/keto reductase family signature 2. 143 160 IPR018170 GO:0016491
Rops4g00043 315 CDD AKR_AKR4C1-15 6 292 IPR044498 GO:0016491
Rops4g00043 315 PIRSF AKR 1 307 IPR020471 GO:0016491
Rops4g00043 315 Gene3D - 4 315 IPR036812 -
Rops4g00043 315 SUPERFAMILY NAD(P)-linked oxidoreductase 8 295 IPR036812 -
Rops4g00043 315 ProSitePatterns Aldo/keto reductase family signature 1. 42 59 IPR018170 GO:0016491
Rops4g00043 315 PANTHER ALDO/KETO REDUCTASE 7 287 - -
Rops4g00043 315 ProSitePatterns Aldo/keto reductase family putative active site signature. 254 269 IPR018170 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00043 Rops-Chr4 1163414 1166607 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00043 K00002 - gmx:100781137 584.719