Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2200 atgagCAACGCAATCAGGTTCTTTCAGTTGAACACAGGAGCCAAGATACCTTCTATTGGGTTAGGCACATATGAGGTTGATCCTGCTGCTGTCACCCTTGCCGTTAAGGCGGGGTTCAGGCATATAGATTGTGCTCAATTCTATGCCAATCAAGCAGAGATTGGTTCTGCTCTCAAGAAGGTCTTGGAGGACGGTGTTGTGAAGCGCGAGGACTTGTGGATCACCTCCAAACTCTGGTGCACAGATCATGATCCGGAAGATGTACCAGAAGCATTACATAGAACTTTGCAAGAATTGCAACTTGACTACCTAGATCTCTATCTAATTCATTTTCCAGTCCGCACAAAAAAGGGATCAGCAGGATTACATCCAGAAGATATTATACAACATGACATACCAAGCACATGGAGAGCAATGGAAGCGCTCTATGACTCAGGCAAGGCTAGAGCCATAGGAGTGAGCAATTTCTCTTCAAAAAAGCTTCAAGATCTGTTGGATATAGCAAGAGTGCTTCCTGCTGTTAACCAAGTGGAATGCCACCCACAATGGCAGCAGCCAAAGCTGCATGCATTCTGTGAGTCTAAAGGGATTCACCTATCTGGATACTCTCCACTGGGATCAGGTGTAAATGTCAATGGTGGCATCCTGAAAAATCCAGTTCTCAAAGAGGTTGCAGAGAAATTAGGGAAGACACCAGCACAAGTTGCCCTTAGATGGGGCCTGCAATTAGGTCATAGTGTGCTGCCTAAGAGTAGTAATGAGGTTAGGATCAAGGAAAATTTGGATGTATTTGACTGGTCTATTCCTGAAGATTTGATGGCCAAGTTCTATGGAATTAAGCAGGAAAAGATACTTAAGGGTGAATTTTTTGTTCACGAGACCTATGGTGCCTATAAGACACTTGAAGACCTATGGGACGGTGAAATCTGA 930 0.4409 MSNAIRFFQLNTGAKIPSIGLGTYEVDPAAVTLAVKAGFRHIDCAQFYANQAEIGSALKKVLEDGVVKREDLWITSKLWCTDHDPEDVPEALHRTLQELQLDYLDLYLIHFPVRTKKGSAGLHPEDIIQHDIPSTWRAMEALYDSGKARAIGVSNFSSKKLQDLLDIARVLPAVNQVECHPQWQQPKLHAFCESKGIHLSGYSPLGSGVNVNGGILKNPVLKEVAEKLGKTPAQVALRWGLQLGHSVLPKSSNEVRIKENLDVFDWSIPEDLMAKFYGIKQEKILKGEFFVHETYGAYKTLEDLWDGEI 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2200 309 Pfam Aldo/keto reductase family 29 275 IPR023210 -
Ssu4g2200 309 SUPERFAMILY NAD(P)-linked oxidoreductase 6 279 IPR036812 -
Ssu4g2200 309 PIRSF AKR 1 303 IPR020471 GO:0016491
Ssu4g2200 309 PRINTS Aldo-keto reductase signature 34 58 IPR020471 GO:0016491
Ssu4g2200 309 PRINTS Aldo-keto reductase signature 173 202 IPR020471 GO:0016491
Ssu4g2200 309 PRINTS Aldo-keto reductase signature 215 239 IPR020471 GO:0016491
Ssu4g2200 309 PRINTS Aldo-keto reductase signature 94 112 IPR020471 GO:0016491
Ssu4g2200 309 PRINTS Aldo-keto reductase signature 139 156 IPR020471 GO:0016491
Ssu4g2200 309 ProSitePatterns Aldo/keto reductase family signature 2. 139 156 IPR018170 GO:0016491
Ssu4g2200 309 PANTHER ALDO/KETO REDUCTASE 4 308 - -
Ssu4g2200 309 ProSitePatterns Aldo/keto reductase family putative active site signature. 248 263 IPR018170 GO:0016491
Ssu4g2200 309 CDD AKR_AKR4C1-15 6 286 IPR044498 GO:0016491
Ssu4g2200 309 ProSitePatterns Aldo/keto reductase family signature 1. 38 55 IPR018170 GO:0016491
Ssu4g2200 309 Gene3D - 5 309 IPR036812 -
Ssu4g2200 309 PANTHER ALDO/KETO REDUCTASE FAMILY OXIDOREDUCTASE 4 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2200 Ssu-Chr4 51270969 51273115 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2200 K00002 - qsu:112024106 475.707