Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi4g0674 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0675 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0676 . . . . Adu10g01887 . Aed4g1720 . . Aev08g0534 . Ahy20g2103 . Aip10g02476 . . . Amo20g2716 . Apr9g0239 Arst10g02396 . . . . . . . Car05g02901 . Cca03g01643 . . . . Dod09g1881 . . . . . Gma17g02112 Gma04g00553 Gma06g00542 . . . . . . Lal17g0197 . . . . . . . . . Lapu9g01959 . Lasa5g03971 . . . . . . . . . Lja1g3957 . Mal2g0962 . Mepo3g07365 . Mesa9g04917 . . . Mtr3g3847 . . . Phco7g00673 . . . . . Pste2g01500 . . . . . Pumo10g00172 . Pvu9g0883 . Rops10g01336 . Seca4g01105 . Spst9g00696 . Ssu1g3542 . Sto5g0941 Sto9g3372 Tpr7g0717 . Trre5g05101 . Tsu07g00722 . Vian4g02055 . Vifa2g03906 . Vimu10g03048 . Viun9g03179 . Vivi3g01473 . Vra5g1311 .
Vvi4g0677 . . . . . . Aed4g1719 . Aev07g1306 . Ahy16g3241 Ahy20g2106 Aip06g03484 Aip10g02479 . . . Amo20g2719 . Apr9g0240 . . . . . . Bva10g00464 . Car05g02899 . Cca03g01644 . . . Dod08g1786 . . . . . . Gma17g02111 . Gma06g00540 . . . . . . Lal17g0194 . . . . . . . . . . . . . . . . . . . . . Lja1g3959 . Mal2g0964 . . . . . . . Mtr3g3846 . . . . . . . Psa5g0805 . . . . . . . . . . . . . . . . . Ssu1g3544 . Sto5g0942 . Tpr7g0719 . . . Tsu07g00724 . . . . . . . . . . . Vra5g1313 .
Vvi4g0678 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0679 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto9g3374 . . . . . . . . . . . . . . . . . .
Vvi4g0680 . . . . . . . . . . . Ahy20g2108 . Aip10g02481 . . . Amo20g2720 . . . . . . . . Bva10g00465 . . . . . . . . . . . . . . . Gma04g00550 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0681 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0682 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0683 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi4g0674 Chr4 7016288 7025112 +
Vvi Vvi4g0675 Chr4 7027571 7101962 +
Vvi Vvi4g0676 Chr4 7106898 7110246 -
Adu Adu10g01887 Chr10 86162859 86165229 -
Aed Aed4g1720 Chr4 21605495 21608758 +
Aev Aev08g0534 Chr08 3032304 3034423 +
Ahy Ahy20g2103 Chr20 118112594 118114922 -
Aip Aip10g02476 Chr10 110751384 110753762 -
Amo Amo20g2716 Chr20 125076694 125078985 -
Apr Apr9g0239 Chr9 3088825 3092009 -
Arst Arst10g02396 Chr10 85080033 85082344 -
Car Car05g02901 Chr05 73982124 73984993 +
Cca Cca03g01643 Chr03 35443611 35446183 -
Dod Dod09g1881 Chr09 40388756 40390248 -
Gma Gma17g02112 Chr17 38584023 38584439 +
Gma Gma04g00553 Chr04 4983206 4985883 +
Gma Gma06g00542 Chr06 4806630 4809215 +
Lal Lal17g0197 Chr17 1189878 1192625 +
Lapu Lapu9g01959 Chr9 34437645 34440006 -
Lasa Lasa5g03971 Chr5 614735220 614735750 +
Lja Lja1g3957 Chr1 50224730 50227434 -
Mal Mal2g0962 Chr2 11189093 11191421 -
Mepo Mepo3g07365 Chr3 87079104 87081969 +
Mesa Mesa9g04917 Chr9 83615180 83617690 +
Mtr Mtr3g3847 Chr3 52265604 52268451 +
Phco Phco7g00673 Chr7 5137204 5139236 +
Pste Pste2g01500 Chr2 16221637 16223774 +
Pumo Pumo10g00172 Chr10 2430297 2432801 -
Pvu Pvu9g0883 Chr9 13540316 13542591 +
Rops Rops10g01336 Chr10 26091722 26094221 +
Seca Seca4g01105 Chr4 17667235 17670026 -
Spst Spst9g00696 Chr9 5966844 5969186 +
Ssu Ssu1g3542 Chr1 90327001 90329502 -
Sto Sto5g0941 Chr5 6325513 6327902 -
Sto Sto9g3372 Chr9 33511679 33513505 -
Tpr Tpr7g0717 Chr7 6355106 6358186 -
Trre Trre5g05101 Chr5 52327150 52329642 +
Tsu Tsu07g00722 Chr07 5900704 5904231 -
Vian Vian4g02055 Chr4 37352084 37353984 -
Vifa Vifa2g03906 Chr2 1140544339 1140546158 +
Vimu Vimu10g03048 Chr10 41381386 41383251 -
Viun Viun9g03179 Chr9 39078170 39080310 -
Vivi Vivi3g01473 Chr3 24335786 24339241 -
Vra Vra5g1311 Chr5 20014308 20016317 -
Vvi Vvi4g0677 Chr4 7134534 7136821 +
Aed Aed4g1719 Chr4 21600661 21604692 -
Aev Aev07g1306 Chr07 11748204 11751731 +
Ahy Ahy16g3241 Chr16 148989041 148992677 -
Ahy Ahy20g2106 Chr20 118183899 118186323 +
Aip Aip06g03484 Chr06 131990485 131993216 -
Aip Aip10g02479 Chr10 110816123 110817854 +
Amo Amo20g2719 Chr20 125145026 125150387 +
Apr Apr9g0240 Chr9 3096407 3098255 +
Bva Bva10g00464 Chr10 4679104 4681700 +
Car Car05g02899 Chr05 73972703 73976212 -
Cca Cca03g01644 Chr03 35448070 35456399 +
Dod Dod08g1786 Chr08 42330555 42336265 -
Gma Gma17g02111 Chr17 38576871 38579491 -
Gma Gma06g00540 Chr06 4795017 4797046 -
Lal Lal17g0194 Chr17 1177882 1180268 -
Lja Lja1g3959 Chr1 50251604 50254492 +
Mal Mal2g0964 Chr2 11201215 11203623 +
Mtr Mtr3g3846 Chr3 52253462 52261507 -
Psa Psa5g0805 Chr5 64961440 64963963 +
Ssu Ssu1g3544 Chr1 90345391 90347556 +
Sto Sto5g0942 Chr5 6330955 6333027 +
Tpr Tpr7g0719 Chr7 6369438 6372052 +
Tsu Tsu07g00724 Chr07 5917806 5920114 +
Vra Vra5g1313 Chr5 20024398 20027213 +
Vvi Vvi4g0678 Chr4 7150219 7155438 +
Vvi Vvi4g0679 Chr4 7177296 7177598 -
Sto Sto9g3374 Chr9 33520936 33525625 +
Vvi Vvi4g0680 Chr4 7178919 7187738 +
Ahy Ahy20g2108 Chr20 118195622 118200543 +
Aip Aip10g02481 Chr10 110828924 110833765 +
Amo Amo20g2720 Chr20 125152714 125157611 +
Bva Bva10g00465 Chr10 4689615 4694934 +
Gma Gma04g00550 Chr04 4952793 4957796 -
Vvi Vvi4g0681 Chr4 7189990 7192387 +
Vvi Vvi4g0682 Chr4 7205148 7207605 +
Vvi Vvi4g0683 Chr4 7244161 7246871 +