Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2716 ATGGCCTTGCTGAATCCATCTCTTCCCCACACCCAAGCCTTTCTTCCTCTCCGTCTTTCTGCTACACCATCCAAGCAAACTTCACCACTACTATGGACTACTCTCTCTTCCTATCCATTCAAACCATTGTCAAGGAGGATGAAGCATGCAAGGTGTGAAGCTGTGGCAGACATCAAAGCTGAGCCCTTGGTTGAAGGGGAAGGAGAAGAAGAAGAAGAAGATCACAAGGTTCTTATGGGGCCTTCTTCAGAGGAAGAGAGAAGGGGTGAGAGGGTTGTTGCTGACTATGATTGGACTCAAGAGTGGTACCCTTTGTACCTCACCAACAATGTCCCTGATGATGCACCTCTTGGTCTCAGTGTCTTTGACAAGCAGCTCGTCTTGTTCAAGGACCCCAATGGCGTCTTCCACTGTTTCGAAGATCGTTGTCCACACAGGTTAGCAAAACTATCTGAAGGTCAGTTGATTGATGGAAAGCTTGAGTGTCTATACCATGGATGGCAGTTCAAAGGCGACGGAAAATGTGTAAAGATACCTCAGCTTCCAGCTGATGCTAAAATCCCAAGATCAGCTTGTCTTAAATCATATGAGGTGAAAGAATCCCAAGGAGTTGTTTGGGTATGGATGTCACCTAAGACACCTCCAAATGTCAATAAGCTACCTTGGTTTGAGAACTTTGCTAGACCAGGGTTTCAAGATGTTTCAACAATTCATGAACTCCCATATGATCATTCTATTCTCTTGGAAAACCTGATGGATCCTGCTCACATTCCAATCTCACATGACAGAACAGACTGGACTGCGAAAAGAGAGGACGCACAGCCACTGCATTTTGAGGTAACCGAGCGAACTGATAGAGGGTTTGCTGGTTGGTGGGGAAAAGAGCAAGAGGGCTCACTGCCGAACTTCTTACGGTTCGAGGCTCCTTGTGTGCTCCAAAACAACAGGGAAATGGTTGATAAAGATGGTCAGAAACACTACTTCACTGGCTTATTCCTCTGTAGACCAACAGGGCAAGGGAAATCCATGCTGATTGTGAGATTTGGAGGAACAAAAAGATCCCCATTAGCGAAATTGTTCCCTAAATGGTACTTCCATCAGAACGCTTGCAAGGTGTTTGAGCAGGACATGGGATTCCTYTCATCCCAAAATGAAGTTCTATTGAAAGAGAAAGTTCCAACAAAYGAACTATATCTGAACCTAAAATCATCAGACACTTGGGTAGCCGAATACCGGAAGTGGATGGACAAAGTAGGGCATGGGATGCCGTATCATTTCGGTCACAGCACCATTTCGTTGCCCAAAGAGCCTGCTGTAGTTGAACATGCACCAGCAGGACTCATAGCAGGACAATCAGCATCAAATCCAGCAAAGGGTGGCACCGGAACAATGCATGCCCCGAACTTGGCCAATAGATACTTCAGGCATGTGATTCATTGCAAAGGTTGTAGCACGGTGGTCAAGGCTTTCGAAGCTTGGAAGAACGCCCTTTCGGCTGTAGCCATTGCATTCGCCGCATTGTCGATTCTGGTATCTGGGAGGCAGTGGAAAACCCTTCTTTTGGGATCCGCAGCACTGTGCAGTGCTGGAGCCTATGCATGCTCTTCAGCCATTGCATTGAATACAACAAACTTTATCAGGACACACAGGAGATTGTAA 1659 0.4641 MALLNPSLPHTQAFLPLRLSATPSKQTSPLLWTTLSSYPFKPLSRRMKHARCEAVADIKAEPLVEGEGEEEEEDHKVLMGPSSEEERRGERVVADYDWTQEWYPLYLTNNVPDDAPLGLSVFDKQLVLFKDPNGVFHCFEDRCPHRLAKLSEGQLIDGKLECLYHGWQFKGDGKCVKIPQLPADAKIPRSACLKSYEVKESQGVVWVWMSPKTPPNVNKLPWFENFARPGFQDVSTIHELPYDHSILLENLMDPAHIPISHDRTDWTAKREDAQPLHFEVTERTDRGFAGWWGKEQEGSLPNFLRFEAPCVLQNNREMVDKDGQKHYFTGLFLCRPTGQGKSMLIVRFGGTKRSPLAKLFPKWYFHQNACKVFEQDMGFLSSQNEVLLKEKVPTNELYLNLKSSDTWVAEYRKWMDKVGHGMPYHFGHSTISLPKEPAVVEHAPAGLIAGQSASNPAKGGTGTMHAPNLANRYFRHVIHCKGCSTVVKAFEAWKNALSAVAIAFAALSILVSGRQWKTLLLGSAALCSAGAYACSSAIALNTTNFIRTHRRL* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2716 552 Pfam Pheophorbide a oxygenase 306 391 IPR013626 GO:0010277
Amo20g2716 552 Gene3D - 97 226 IPR036922 GO:0051537
Amo20g2716 552 MobiDBLite consensus disorder prediction 73 89 - -
Amo20g2716 552 Pfam Rieske [2Fe-2S] domain 101 183 IPR017941 GO:0051537
Amo20g2716 552 SUPERFAMILY ISP domain 95 216 IPR036922 GO:0051537
Amo20g2716 552 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 51 552 - -
Amo20g2716 552 MobiDBLite consensus disorder prediction 64 89 - -
Amo20g2716 552 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 102 207 IPR017941 GO:0051537
Amo20g2716 552 Gene3D - 229 420 - -
Amo20g2716 552 PANTHER PROTEIN TIC 55, CHLOROPLASTIC 51 552 - -
Amo20g2716 552 SUPERFAMILY Bet v1-like 202 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2716 Amo-Chr20 125076694 125078985 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2716 - - gmx:100808233 910.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2716 20 125076694 125078985 Amo20g2716 20 125076694 125078985 ECH
Amo10g2273 10 79860196 79862206 Amo20g2716 20 125076694 125078985 hybridization