Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3957 ATGGCATTGATCAACCAATTCATCTTCCCCACTCAAACATGCTTCCCTTTGCATGTTTCAGCTTCACAATCCAAGCAAGTACTGCTTTGGTCTCTTACCTCAAACCCCTTCAAACCAGTTTTGCCATCATCAAGAAGGAAAAACACCAAGTGGGGTGCCACTGCAGACATCAAAACCGCACCTTTACTTGATGGGGAAGAAGATCACAAGGTTCTTGTTGGTCCTTCTAGCGAGGAGGAGCGAAGAGGTGACAGGGTTGTTGCAGATTATGACTGGACAGAGGAATGGTACCCTCTGTACCTCACTAAGAATGTTCCTGAAGATGCGCCTCTTGGTCTCAAAGTGTTTGATAAGGACCTTGTGTTGTTTAGAGATGGGAATGGCGAGTTTCGTTGTTATGAAGATCGATGCCCCCACAGGTTAGCAAAACTATCTGAAGGCCAGTTAATTGATGGAAGGATCGAATGCCTATACCATGGATGGCAATTTGAAGGCGAGGGAAAATGTGTGAAGATACCTCAGCTTCCAGCTGATGCCAAAATTCCTAAGTCAGCCTGTGTTAAAACATATGAGGCGAGGGACTCTCAAGGTGTTATTTGGGTATGGATGTCTCTAAAGACACCTCCAAATGTCAGTAAGATACCCTGGTTTGAGAACTTCGCGAGGCCAGGGTTTCAAGATGTCTCAACAACTCATGAACTCCCATATGATCATTCTATTCTTCTGGAAAACCTGATGGATCCTGCACATGTCCCAATCTCACATGATAGAACGGACTGGACTGCAAAAAGAGAGGATGCACAGCCACTGTCTTTTGAGGTGGCTGAACGAACCGATAGAGGGTTTGCAGGTTGGTGGGGCAGAGAGAAAGATGGCTCCAGGCCTAATTTCTTACGGTTCGGGGCTCCTTGTGTTCTGCAAAACAACAGAGAAATTGTTGATAAAAATGGTGAGACAAACTACTTCAGCGGTCTGTTCCTATGTAGACCAACTGGGCAAGGGAAATCCATGCTGATAGTGAGGTTCGGAACAACGAAAAGAACTCCAGTCGCAAAACTGTTTCCTGAATGGTACTTCCATCAGAATGCAAGCAAGGTGTTTGAGCAAGACATGGGATTTCTATCATCCCAGAATGAAATTCTCTTGAAAGAGAAGCTTCCGACAAAGGAACTATATCTGAATCTAAAATCATCAGACACATGGGTTGCTGAATACAGAAAGTGGATGGACAAAGTGGGACATGGGATGCCTTATCACTTTGGTCACAGCACTATTTCCTTGCCCAACGAGCCTGCTGTGGTTGAACATGCACCTGCTGGACTGGTTGCAGGACTATCAGCTTCATCTCCTGCCAAAGGGGGTATTGGAACAATGCATGCCCCAAATTTAGCCAACAGATATTTCAGGCATGTAATACATTGCAAAGGATGTAGAACAGTCGTCAAAGCTTTCCAAGCTTGGAAAAATGCCCTTACAGCTGTGGCAGTTGCATCAGCAGCATTGGCAATTCTAGTATCTGGGAGACAATGGAAAGCCCTTCTGTTGGTTTCGGCATCCCTGTGCTCTGTTGGAGTCTATGCTTGTTCAACTGCTATTGCAATGAATACTACAAACTTTATTAGGACACATAGGAGATTGTGA 1641 0.4509 MALINQFIFPTQTCFPLHVSASQSKQVLLWSLTSNPFKPVLPSSRRKNTKWGATADIKTAPLLDGEEDHKVLVGPSSEEERRGDRVVADYDWTEEWYPLYLTKNVPEDAPLGLKVFDKDLVLFRDGNGEFRCYEDRCPHRLAKLSEGQLIDGRIECLYHGWQFEGEGKCVKIPQLPADAKIPKSACVKTYEARDSQGVIWVWMSLKTPPNVSKIPWFENFARPGFQDVSTTHELPYDHSILLENLMDPAHVPISHDRTDWTAKREDAQPLSFEVAERTDRGFAGWWGREKDGSRPNFLRFGAPCVLQNNREIVDKNGETNYFSGLFLCRPTGQGKSMLIVRFGTTKRTPVAKLFPEWYFHQNASKVFEQDMGFLSSQNEILLKEKLPTKELYLNLKSSDTWVAEYRKWMDKVGHGMPYHFGHSTISLPNEPAVVEHAPAGLVAGLSASSPAKGGIGTMHAPNLANRYFRHVIHCKGCRTVVKAFQAWKNALTAVAVASAALAILVSGRQWKALLLVSASLCSVGVYACSTAIAMNTTNFIRTHRRL* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3957 546 Pfam Rieske [2Fe-2S] domain 95 177 IPR017941 GO:0051537
Lja1g3957 546 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 63 546 - -
Lja1g3957 546 SUPERFAMILY ISP domain 89 208 IPR036922 GO:0051537
Lja1g3957 546 Pfam Pheophorbide a oxygenase 300 385 IPR013626 GO:0010277
Lja1g3957 546 Gene3D - 91 220 IPR036922 GO:0051537
Lja1g3957 546 SUPERFAMILY Bet v1-like 197 415 - -
Lja1g3957 546 Gene3D - 223 414 - -
Lja1g3957 546 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 96 201 IPR017941 GO:0051537
Lja1g3957 546 PANTHER PROTEIN TIC 55, CHLOROPLASTIC 63 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3957 Lja-Chr1 50224730 50227434 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3957 - - gmx:100818625 952.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3957 1 50224730 50227434 Lja1g3957 1 50224730 50227434 ECH