Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03048 ATGGCGTTGGTGAATCCCTTTTTGTCTCCCACTCGAACTTTTCTCCCTTTGCGAGTTTCTGCGCCGCCAAACAAGGGACTGCGTTGGACTGTCTACTCCGCTTCCTTCAAACCATCGCTAAGATCCAAGCACGCCACGTGTGGCGCCACTGCGGACATAAAAGCTGCACCTTTAGCTGACAGCGAAGCAGATGGCGCAGTTCTTGTGGTTCCAACCAGCGAGGAGGAGGTAAAAGGGGAGTATGACTGGACGGAGGAGTGGTACCCTTTGTATCTCACTAAGAATGTTCCCGAAGATGCACCCTTGGGGCTCACAGTGTTTGATAAACAACTCGTGTTGTTCAAGGATGGCAATGGCCAGTTACACTGTTACGAAGATCGCTGCCCCCACAGGTTACTCACTGCTTATTATGATTGTAATTGTGGGTTGAGTTTGGTTGTTTTCACTTGGAATTTGTTAGCCAAACTGTCAGAGGGACAGTTGATTGATGGAAGGCTTGAGTGTCTATACCATGGATGGCAATTTGAAGGGGAGGGCAAATGTGTGAAGATACCTCAGGTTGGTAATGCACCTGCTGTTATCCTCGGCCAAATCAAACTTCCGGCTGATGCCAAAATCCCTAGGACAGCTTGTGTTGAAACGTATGAAGTGAGGGACTCTCAAGGTGTTATTTGGGTGTGGATGTCCCTCAAAACACCTCCAAATGATAGTAAACTACCTTGGTTTGAGAACTTTGCAAGGCCGGGATTCAGAGACATTTCAACAGTTCATGAACTCCCTTACGATCACTCTATTCTTCTGGAGAACCTGATGGATCCTGCTCATGTCCCTATCTCACATGACAGAACGGATTGGACCGCAAAAAGGGAGGATGCTCGGCCACTGAGTTTTGAGGTGATTGAACGAACTGATAGAGGGTTTGCAGGTTGGTGGGGTGCTGAGAAAGATGGGTCCAGGCCTAGCTTCTTGAGGTTTGAGGCTCCGTGTGTTCTACAAAATAACAGAGAAATTGTTGATAAGAATGGTGTAAAAAACTACTTCAGTGGCCTGTTCCTTTGTAGACCAACTGGGCAAGGGAAATCCATGCTTATAGTGAGGTTTGGATCAACAAGATCAGCATCTCCACTGGCAAAACTGTTTCCTGAATGGTACTTCCATCAGAATGCATCCAAGGTTTTTGAGCAAGACATGGGATTCTTATCATCTCAGAATGAAATTCTCTTGAAAGAGAAGGTTCCAACAAAGCAACTTTATCTGAATCTGAAATCATCAGACACATGGGTTGCTGAATACAGGAAGTGGATGGACAAAGTGGGGCATGGGATGCCATATCATTTTGGTCACAGCACTATCTCTTTGCCCAAAGAACCTGCTGTGGTTGAACATGCACCCGCGGGACTCGTTGCAGGACAATCAGCTTCTTCACCTGCCAAAGGGGGCATTGGAACAATGCATGCTCCAAATTTAGCCAACAGATATTTTAGGCATGTCATACATTGCAAAGGATGTAGAACCGTAGTCAAAGCTTTCCAAGTTTGGAAAAATGCCCTTTCAGCTGTGGCAGTTACATTGGTCGCTTTGGCAATTCTTGTATCTGGGAAACAGTGGAAGGCCATTCTCTTGGCATCTGCTTCCCTTTGCTCTGTTGGAGTCTATGCTTGCTCAAGCGCCATTGCAATGAACACTACAAACTTTGTTAGGACACATAGGAGATTGTGA 1719 0.4631 MALVNPFLSPTRTFLPLRVSAPPNKGLRWTVYSASFKPSLRSKHATCGATADIKAAPLADSEADGAVLVVPTSEEEVKGEYDWTEEWYPLYLTKNVPEDAPLGLTVFDKQLVLFKDGNGQLHCYEDRCPHRLLTAYYDCNCGLSLVVFTWNLLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQVGNAPAVILGQIKLPADAKIPRTACVETYEVRDSQGVIWVWMSLKTPPNDSKLPWFENFARPGFRDISTVHELPYDHSILLENLMDPAHVPISHDRTDWTAKREDARPLSFEVIERTDRGFAGWWGAEKDGSRPSFLRFEAPCVLQNNREIVDKNGVKNYFSGLFLCRPTGQGKSMLIVRFGSTRSASPLAKLFPEWYFHQNASKVFEQDMGFLSSQNEILLKEKVPTKQLYLNLKSSDTWVAEYRKWMDKVGHGMPYHFGHSTISLPKEPAVVEHAPAGLVAGQSASSPAKGGIGTMHAPNLANRYFRHVIHCKGCRTVVKAFQVWKNALSAVAVTLVALAILVSGKQWKAILLASASLCSVGVYACSSAIAMNTTNFVRTHRRL 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03048 572 Pfam Pheophorbide a oxygenase 325 411 IPR013626 GO:0010277
Vimu10g03048 572 Gene3D - 82 141 IPR036922 GO:0051537
Vimu10g03048 572 SUPERFAMILY ISP domain 79 229 IPR036922 GO:0051537
Vimu10g03048 572 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 51 132 - -
Vimu10g03048 572 Pfam Rieske [2Fe-2S] domain 86 190 IPR017941 GO:0051537
Vimu10g03048 572 Gene3D - 248 440 - -
Vimu10g03048 572 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 87 226 IPR017941 GO:0051537
Vimu10g03048 572 Gene3D - 150 245 IPR036922 GO:0051537
Vimu10g03048 572 SUPERFAMILY Bet v1-like 222 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03048 Vimu-Chr10 41381386 41383251 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03048 - - pvu:PHAVU_009G086000g 994.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03048 10 41381386 41383251 Vimu10g03048 10 41381386 41383251 ECH