Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01105 ATGGCCTTGGTGAATCCATTTCTCCCTCCCACCCAAACCTGTCTTCCTCCACGACGTGTTTCTGCTGCTCCACCATCCAACCAAGTACTCTTTTGGACTCTCTCTCCCCAATCTCAGTTCAAGCCAGCGTTGTCCTCATCAAGAAGGAAGCATGCTAGGTGTGGCGCCACGGCAGATATAAAAACTGCACCTTTACTTGATGGGGAAGGAGATCACAAGGTTCTTGTGAGTCCTTCCACAGAGGAGGAGCGGATAGGTGAAAGGGTCGTTGCGGATTATGACTGGACACAGGAATGGTACCCTTTGTACCTCACTAAAAATGTGCCTGATGATGCACCCCTTGGTCTCAAAGTGTTTGACAAGGACCTCGTGCTCTTTAAGGATGGCTATGGCCAGTTTAACTGTTATGAAGATCGATGCCCACACAGGAGAGGAGATGGTAGAGTAGGTTGCATGCCAAGATGCCAACCCTGTGTTAGCCTTAAAAACAGCCTAACAGTCTATGAAATTCTGATTCCATGTCTGCCAAAATGCTGGACCTTATCTTTTGTTCTATTCAGGTTAGCAAAACTATCTGAAGGCCAGTTGATTGATGGAAGGATCGAGTGCTTATACCATGGATGGCAATTCGAAGGCGAGGGAAAATGTGTGAAGATACCACAGCTTCCAGCTGATGCCAAAATTCCTCGGTCAGCCTGTGTTAAAACATATGAGGTGAGGGACAGTCAAGGTGTTATTTGGGTATGGATGTCTACAAAGACACCTCCAGATGTAAGTAAAATACCTTGGTTTGAGAACTTTGCAAGGCCAGGGTTTCAAGATGTTTCAACAACTCATGAACTCCCATATGATCACTCTATTCTCCTGGAAAATCTGATGGATCCTGCTCATATTCCAATCTCACATGATAGAACAGATTGGACTGCAAAAAGAGAGGATGCACAGCCACTGTGTTTTGAGGTGACTGAACGAACTGATAGAGGTTTTGCAGGTTGGTGGGGCAGAGAGAAAGATGGGTCTATGCCTAACTTCTTACGGTTTGGGGCTCCTTGTGTTCTACAAAACAACAGGGAACTTGTTGATAAAAATGGTGAGAAAAACTACTTCACTGGTCTGTTCCTCTGTAGACCAACTGGTCAAGGGAAATCAATGCTGATAGTGAGATTTGGAGGAACAAAAAGATCTCCACTAGCAAAACTATTTCCTCAATGGTACTTCCATCAGAATGCAAGCAAGGTGTTTGAGCAAGACATGGGATTTTTATCATCTCAAAATGAAGTTCTTTTGAAAGAGAAAGTTCCAACAAAGGAACTATACCTGAATCTCAGATCATCAGACACATGGGTTGCTGAATACAGGAAGTGGATGGACAAAGTGGGACATGGAATGCCATATCATTTTGGTCACAGCACTATTTCCTTGCCCAAAGAGCCTGCTGTGATTGAACATGCACCTGCTGGACTCATTGCAGGACTATCAGCTTCCTCACCTGCCAAGGGGGGCATTGGAACAATGCATGCCCCAAATTTAGCCAATAGATATTTTAGGCATGTAATACATTGCAAAGGATGTAGAACCGTCGTCAAAGCTTTCCAAGCTTGGAAAAATGCCCTTTCAGCTGTGGCAGTTGCATTAGCAGCATTGGCAATTCTGGTGTCTGGGAGACAATGGAAAGCCCTTCTATTGGTATCTGCATCCCTGTGCTCTTTTGGAGTCTATGCTTGCTCAACCGCCATTGCAATGAATACAACAAACTTTATTAGGACACACAGGAGATTGTGA 1782 0.4467 MALVNPFLPPTQTCLPPRRVSAAPPSNQVLFWTLSPQSQFKPALSSSRRKHARCGATADIKTAPLLDGEGDHKVLVSPSTEEERIGERVVADYDWTQEWYPLYLTKNVPDDAPLGLKVFDKDLVLFKDGYGQFNCYEDRCPHRRGDGRVGCMPRCQPCVSLKNSLTVYEILIPCLPKCWTLSFVLFRLAKLSEGQLIDGRIECLYHGWQFEGEGKCVKIPQLPADAKIPRSACVKTYEVRDSQGVIWVWMSTKTPPDVSKIPWFENFARPGFQDVSTTHELPYDHSILLENLMDPAHIPISHDRTDWTAKREDAQPLCFEVTERTDRGFAGWWGREKDGSMPNFLRFGAPCVLQNNRELVDKNGEKNYFTGLFLCRPTGQGKSMLIVRFGGTKRSPLAKLFPQWYFHQNASKVFEQDMGFLSSQNEVLLKEKVPTKELYLNLRSSDTWVAEYRKWMDKVGHGMPYHFGHSTISLPKEPAVIEHAPAGLIAGLSASSPAKGGIGTMHAPNLANRYFRHVIHCKGCRTVVKAFQAWKNALSAVAVALAALAILVSGRQWKALLLVSASLCSFGVYACSTAIAMNTTNFIRTHRRL. 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01105 593 Pfam Rieske [2Fe-2S] domain 98 145 IPR017941 GO:0051537
Seca4g01105 593 Pfam Rieske [2Fe-2S] domain 189 224 IPR017941 GO:0051537
Seca4g01105 593 SUPERFAMILY Bet v1-like 243 462 - -
Seca4g01105 593 Gene3D - 94 158 IPR036922 GO:0051537
Seca4g01105 593 Pfam Pheophorbide a oxygenase 347 432 IPR013626 GO:0010277
Seca4g01105 593 Gene3D - 270 461 - -
Seca4g01105 593 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 99 248 IPR017941 GO:0051537
Seca4g01105 593 Gene3D - 185 267 IPR036922 GO:0051537
Seca4g01105 593 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 30 145 - -
Seca4g01105 593 SUPERFAMILY ISP domain 95 264 IPR036922 GO:0051537
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01105 Seca-Chr4 17667235 17670026 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01105 - - gmx:100818625 957.207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01105 4 17667235 17670026 Seca4g01105 4 17667235 17670026 ECH