Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01643 ATGGCGTTGGTGAATCCATTTCTGTCTCCAACACGAACTTCCCTACCTCTGCGTGTTTCTGCGCCACCAAAACAAGTACTACGTTGGACTCTCTGCTCCCACTCTTCCAAACCATCGTCAAGATCCAAGCACACCAAGTCTTCCGCCACCGCAGACATCAAAGCCGCGGCTTTAGTTGACGGAGAAGCAGATCACGCAGTTCTCGTGGGCCCCACCAGCGAGGAGGACCGAAAAGGGGACTACGACTGGACACAGGAATGGTACCCTTTGTACCTCTCTCAGAATGTTCCGGAAGATGCACCTTTGGGTCTCAAAGTGTTTGATAAACAGCTCGTGTTGTTCAAGGACGGCAATGGCCACTTTCTCTGTTACGAAGATCGCTGCCCCCACAGGTTAGCTAAACTATCTGAGGGACAGTTGATTGATGGAAGGCTTGAGTGTCTATACCATGGATGGCAATTTGAAGGGGAGGGCAAATGTGTGAAGATACCTCAGCTTCCAGCTGACGCCAAAATACCTAGGTCGGCTTGTGTTAGAACATATGAAGTGAGGGACTCTCAAGGTGTTATATGGGTGTGGATGTCCCGGAAGACACATCCAAATGATAGCAAACTACCTTGGTTTGAGAACTTTGCAAGGCCGGGGTTTCAAGATGTGTCAACAACTCATGAACTCCCTTATGATCACTCTATTCTTCTGGAGAACCTGATGGATCCTGCTCATATCCCAATCTCGCATGACAGAACAGATTGGACTGCCAAAAGGGAGGACGCTCAGCCGCTGTGTTTTGAGGTGACAGAACGAACTGATAGAGGGTTTGCAGGTTGGTGGGGCAGAGAGAAAGATGGGTCTATGCCTAACTTCTTGCGGTTTGATGCTCCTTGTGTTCTGCAAAACAATAGGGAAATTGTTGATAAGAATGGTGAAAAGAACTACTTCACTGGCCTGTTCCTTTGCACACCAACTGGGCAAGGGAAATCCCTGCTCATAGTGAGGTTTGGAGGAACGAAAAGATCTCCACTGGCAAAACTGTTTCCTAAGTGGTACTTCCATCAGAATGCAAGCAAGGTGTTTGAGCAAGACATGGGATTCTTGTCATCCCAAAATGAAATTCTCTTGAAAGAGAAGGTTCCAACAAAGGAACTATACTTGAATCTGAAATCATCAGACACATGGGTTGCAGAATACCGGAAGTGGATGGACAAAGTGGGGCATGGGATGCCGTACCATTTTGGTCACAGCACTATCTCTTTGCCCAAAGAGCCTGCTGTGGTTGAACATGCACCTGCTGGACTGGTTGCAGGATTATCAGCTTCCTCACCTGCCAAGGGGGGCATTGGAACTATGCATGCTCCTAATTTAGCCAACAGATACTTTAGGCATGTGATACATTGCAAATCATGTAGAACCGTCGTCAAAGCTTTCCAAACTTGGAAAAATGCTCTTACAGCTGTGGCCGTTGCATTAATTGCAATGGCAGTTCTGGTGTCTGGGAGACAATGGAAGGCCCTTCTCTTGGCATCAGCCTCCCTGTGCTCTATTGGAGTCTATGCTTGTTCAACAGCCATTGCAATGAATACAACAAACTTTATTAGGACACATAGGAGATTGTGA 1614 0.4734 MALVNPFLSPTRTSLPLRVSAPPKQVLRWTLCSHSSKPSSRSKHTKSSATADIKAAALVDGEADHAVLVGPTSEEDRKGDYDWTQEWYPLYLSQNVPEDAPLGLKVFDKQLVLFKDGNGHFLCYEDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQLPADAKIPRSACVRTYEVRDSQGVIWVWMSRKTHPNDSKLPWFENFARPGFQDVSTTHELPYDHSILLENLMDPAHIPISHDRTDWTAKREDAQPLCFEVTERTDRGFAGWWGREKDGSMPNFLRFDAPCVLQNNREIVDKNGEKNYFTGLFLCTPTGQGKSLLIVRFGGTKRSPLAKLFPKWYFHQNASKVFEQDMGFLSSQNEILLKEKVPTKELYLNLKSSDTWVAEYRKWMDKVGHGMPYHFGHSTISLPKEPAVVEHAPAGLVAGLSASSPAKGGIGTMHAPNLANRYFRHVIHCKSCRTVVKAFQTWKNALTAVAVALIAMAVLVSGRQWKALLLASASLCSIGVYACSTAIAMNTTNFIRTHRRL 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01643 537 Pfam Pheophorbide a oxygenase 291 376 IPR013626 GO:0010277
Cca03g01643 537 Gene3D - 82 211 IPR036922 GO:0051537
Cca03g01643 537 PANTHER PROTEIN TIC 55, CHLOROPLASTIC 44 537 - -
Cca03g01643 537 SUPERFAMILY Bet v1-like 188 406 - -
Cca03g01643 537 Gene3D - 214 405 - -
Cca03g01643 537 Pfam Rieske [2Fe-2S] domain 86 167 IPR017941 GO:0051537
Cca03g01643 537 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 87 192 IPR017941 GO:0051537
Cca03g01643 537 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 44 537 - -
Cca03g01643 537 SUPERFAMILY ISP domain 79 200 IPR036922 GO:0051537
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01643 Cca-Chr3 35443611 35446183 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01643 - - gmx:100818625 977.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01643 03 35443611 35446183 Cca03g01643 03 35443611 35446183 ECH