Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1311 ATGGCGTTGGTGAATCCCTTTGTGTCTCCCACTCGAACTTTTCTCCCTTTGCGCGTTTCCGCGCCGCCAAACAAGGGACTGCGTTGGACTGTCTACTCCGCTTCCTTCAAACCATCGCTAAGATCCAAGCACGCCACGTGTGGCGCCATTGCAGACATAAAAGCTGCACCTTTAGCTGACAGCGAAGCAGATGACGCGGTTCTTGTTGTTCCAACCACCGAGGAGGAGGTAAAAGGGGAGTATGACTGGACGGAGGAGTGGTACCCTTTGTATCTCACTAAGAATGTTCCCGAAGATGCACCCTTGGGGCTCACAGTGTTTGATAAACAACTCGTGTTGTTTAAGGATGGCAATGGCCAGTTACACTGTTACGAAGATCGCTGCCCCCACAGGTTAGCCAAACTGTCAGAGGGACAGTTGATTGATGGAAGGCTTGAGTGTCTATACCATGGATGGCAATTTGAAGGGGAGGGCAAATGTGTGAAGATACCTCAGCTTCCGGCTGATGCCAAAATCCCTAGGACAGCTTGTGTTAAAACGTATGAAGTGAGGGACTCTCAAGGTGTTATTTGGGTGTGGATGTCCCTCAAAACACCTCCCAATGATAGTAAACTACCTTGGTTTGAGAACTTTGCAAGGCCGGGATTCAGAGACATTTCAACAGTTCATGAACTCCCTTACGATCACTCTATTCTTCTGGAAAACCTGATGGATCCTGCTCATGTCCCTATCTCACATGACAGAACGGATTGGACCGCAAAAAGGGAGAATGCTCGGCCACTGAGTTTTGAGGTGATTGAACGAACTGATAGAGGGTTTGCAGGTTGGTGGGGTGCTGAGAAAGATGGGTCCAGGCCTAACTTCTTGAGGTTTGGTGCTCCGTGTGTTCTACAAAATAACAGGGAAATAGTTGATAAGAATGGTGTAAAAAACTACTTCAGTGGCCTGTTCCTTTGTAGACCAACTGGGCAAGGGAAATCCATGCTTATAGTGAGGTTTGGATCAACAAGATCATCATCTCCACTGGCAAAACTGTTTCCTGAGTGGTACTTCCATCAGAATGCATCCAAGGTTTTTGAGCAAGACATGGGATTCTTATCATCTCAGAATGAAATTCTCTTGAAAGAGAAGGTTCCAACAAAGCAACTTTATCTGAATCTGAAATCATCAGACACATGGGTTGCTGAATACAGGAAGTGGATGGACAAAGTGGGGCATGGGATGCCATATCATTTTGGTCACAGCACTATCTCTTTGCCCAAAGAACCTGCTGTGGTTGAACATGCACCCGCCGGACTCGTTGCAGGACAATCAGCTTCTTCACCTGCCAAAGGGGGCATTGGAACAATGCATGCTCCAAATTTAGCCAACAGATATTTTAGGCATGTGATACATTGCAAAGGATGTAGAACCGTAGTCAAAGCTTTCCACGCTTGGAAAAATGCCCTTTCAGCTGTGGCAGTTACATTGGTCGCTTTGGCAATTCTTGTATCTGGGAAACAGTGGAAGGCCATTCTCTTGGCATCTGCTTCCCTTTGCTCTGTTGGAGTCTATGCTTGCTCAAGCGCCATTGCAATGAACACTACAAACTTTCTTAGGACACATAGGAGATTGTGA 1617 0.4675 MALVNPFVSPTRTFLPLRVSAPPNKGLRWTVYSASFKPSLRSKHATCGAIADIKAAPLADSEADDAVLVVPTTEEEVKGEYDWTEEWYPLYLTKNVPEDAPLGLTVFDKQLVLFKDGNGQLHCYEDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQLPADAKIPRTACVKTYEVRDSQGVIWVWMSLKTPPNDSKLPWFENFARPGFRDISTVHELPYDHSILLENLMDPAHVPISHDRTDWTAKRENARPLSFEVIERTDRGFAGWWGAEKDGSRPNFLRFGAPCVLQNNREIVDKNGVKNYFSGLFLCRPTGQGKSMLIVRFGSTRSSSPLAKLFPEWYFHQNASKVFEQDMGFLSSQNEILLKEKVPTKQLYLNLKSSDTWVAEYRKWMDKVGHGMPYHFGHSTISLPKEPAVVEHAPAGLVAGQSASSPAKGGIGTMHAPNLANRYFRHVIHCKGCRTVVKAFHAWKNALSAVAVTLVALAILVSGKQWKAILLASASLCSVGVYACSSAIAMNTTNFLRTHRRL* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1311 538 Pfam Pheophorbide a oxygenase 291 377 IPR013626 GO:0010277
Vra5g1311 538 Gene3D - 82 211 IPR036922 GO:0051537
Vra5g1311 538 Gene3D - 214 406 - -
Vra5g1311 538 PANTHER PROTEIN TIC 55, CHLOROPLASTIC 72 538 - -
Vra5g1311 538 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 87 192 IPR017941 GO:0051537
Vra5g1311 538 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 72 538 - -
Vra5g1311 538 SUPERFAMILY Bet v1-like 188 407 - -
Vra5g1311 538 SUPERFAMILY ISP domain 78 200 IPR036922 GO:0051537
Vra5g1311 538 Pfam Rieske [2Fe-2S] domain 86 168 IPR017941 GO:0051537
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1311 Vra-Chr5 20014308 20016317 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1311 - - pvu:PHAVU_009G086000g 1012.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1311 5 20014308 20016317 Vra5g1311 5 20014308 20016317 ECH