Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0683 ATGGCCACTCCCATTTCCACCATCTTCCTCCTGAAGTTTCTCCTGTATTCTGCTCTTCTTTCCTCCAAGAGAGGCCTTGCTTTTCAAGGAAGAAAGACTGCACTCTCAACACCCAGTACTCTTCACAATGTCCATATCACTTCGCTGATGCCTTCAAGCGTTTGCAGCCCCTCTCCCAAAGGTGACGACAAAAGGGCATCTCTGGAAGTGATTCATAAACATGGACCATGCTCAAAACTCAGCCAAGACAAGGGTCGTTCTCCGTCTCGCACACAGATGCTCGACCAAGACGAGTCTCGGGTCAATTCAATTCGATCAAGGCTAGCCAAGAACCCTGCAGATGGAGGCAAATTGAAGGGCTCTAAGGTCACTCTACCAAGCAAGTCTGGAAGCACCATTGGCACAGGCAACTACGTTGTGACAGTAGGCCTCGGCACACCAAAGAGAGACCTCACTTTCATATTTGACACTGGGAGTGACCTCACTTGGACTCAATGTGAGCCTTGCGCAAGGTATTGCTACCATCAACAAGAACCCATCTTCAACCCCTCCAAGTCCACATCTTATACCAACATCTCCTGTAGCTCACCCACATGCGATGAACTCAAGTCCGGCACCGGCAACTCTCCTTCCTGCTCAGCCTCCACTTGTGTTTACGGCATACAGTATGGTGACCAGTCCTATTCTGTTGGATTCTTCGCTCAAGATAAGCTTGCCTTGACATCCACAGATGTGTTCAATAATTTCCTATTCGGGTGCGGCCAAAACAACCGTGGCCTATTTGTTGGCGTAGCTGGGCTGATAGGGCTGGGGCGAAACGCTCTATCCCTTGTGTCTCAGACAGCTCAAAAGTATGGCAAACTTTTCTCCTACTGTCTCCCATCCACCAGTAGCTCAACTGGATATCTTACGTTTGGAAGTGGAGGTGGAACCTCTAAAGCAGTGAAATTTACGCCATCCTTGGTGAACTCACAGGGCCCATCATTTTACTTCCTGAATTTGATAGCGATAAGCGTAGGGGGACGCAAATTATCGACATCAGCATCGGTGTTTTCCACCGCAGGCACCATCATAGACTCGGGGACAGTCATTAGTCGGTTGCCCCCAACAGCATATTCTGACTTGCGGGCATCTTTCCAGCAACAGATGTCTAAATATCCAAAGGCAGCTCCAGCTTCCATACTCGACACATGCTATGACTTTAGCCAATATGACACGGTGGACGTGCCCAAGATCAATCTATACTTCAGTGATGGTGCCGAGATGGACTTAGATCCCTCAGGGATCTTTTATATTTTGAACATATCACAAGTTTGCCTAGCCTTTGCGGGAAACAGTGATGCCACTGATATTGCCATCCTAGGAAATGTGCAGCAAAAGACATTTGATGTGGTGTACGACGTCGCTGGAGGGAGGATTGGATTCGCCCCGGGAGGCTGCGAGTAA 1446 0.4889 MATPISTIFLLKFLLYSALLSSKRGLAFQGRKTALSTPSTLHNVHITSLMPSSVCSPSPKGDDKRASLEVIHKHGPCSKLSQDKGRSPSRTQMLDQDESRVNSIRSRLAKNPADGGKLKGSKVTLPSKSGSTIGTGNYVVTVGLGTPKRDLTFIFDTGSDLTWTQCEPCARYCYHQQEPIFNPSKSTSYTNISCSSPTCDELKSGTGNSPSCSASTCVYGIQYGDQSYSVGFFAQDKLALTSTDVFNNFLFGCGQNNRGLFVGVAGLIGLGRNALSLVSQTAQKYGKLFSYCLPSTSSSTGYLTFGSGGGTSKAVKFTPSLVNSQGPSFYFLNLIAISVGGRKLSTSASVFSTAGTIIDSGTVISRLPPTAYSDLRASFQQQMSKYPKAAPASILDTCYDFSQYDTVDVPKINLYFSDGAEMDLDPSGIFYILNISQVCLAFAGNSDATDIAILGNVQQKTFDVVYDVAGGRIGFAPGGCE* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0683 481 Pfam Xylanase inhibitor C-terminal 330 476 IPR032799 -
Vvi4g0683 481 Gene3D Acid Proteases 114 307 IPR021109 -
Vvi4g0683 481 MobiDBLite consensus disorder prediction 82 99 - -
Vvi4g0683 481 SUPERFAMILY Acid proteases 132 480 IPR021109 -
Vvi4g0683 481 ProSiteProfiles Peptidase family A1 domain profile. 138 476 IPR033121 -
Vvi4g0683 481 MobiDBLite consensus disorder prediction 76 123 - -
Vvi4g0683 481 FunFam Aspartyl protease AED1 309 481 - -
Vvi4g0683 481 Gene3D Acid Proteases 310 481 IPR021109 -
Vvi4g0683 481 CDD cnd41_like 137 480 IPR033873 -
Vvi4g0683 481 Pfam Xylanase inhibitor N-terminal 138 307 IPR032861 -
Vvi4g0683 481 PANTHER ASPARTYL PROTEASES 45 474 IPR001461 GO:0004190|GO:0006508
Vvi4g0683 481 PRINTS Pepsin (A1) aspartic protease family signature 356 367 IPR001461 GO:0004190|GO:0006508
Vvi4g0683 481 PRINTS Pepsin (A1) aspartic protease family signature 144 164 IPR001461 GO:0004190|GO:0006508
Vvi4g0683 481 PRINTS Pepsin (A1) aspartic protease family signature 452 467 IPR001461 GO:0004190|GO:0006508
Vvi4g0683 481 FunFam Aspartyl protease AED1 114 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0683 Vvi-Chr4 7244161 7246871 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0683 121 481 Miscellaneous Gene Families AT1G44130 25.064 7.50e-19 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0683 - - vvi:100266429 962.214