Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02055 ATGGCGTTGGTGAATCCTTTTGTGTCTCCCACTCGAACTTTCCTCCCTTTGCGCGTTTCCGCGCCGCCAAACAAGGGACTGCGTTGGACTGTCTACTCCGCTTCCTTCAAACCATCGCTAAGATCCAAGCACGCCACGTGTGGCGCCACTGCGGACTTAAAAGCTGCACCTTTAGCTGACAGCGAAGCAGATGGCGCAGTTCTTGTGGTTCCAACCACCGAGGAGGAGGTAAAAGGGGAGTATGACTGGACGGAGGAGTGGTACCCTTTGTATCTCACTAAGAATGTTCCCGAAGATGCACCCTTGGGACTCACAGTGTTTGATAAACAAGTCGTCTTGTTCAAGGATGGCAATGGCCAGTTACACTGTTACGAAGATCGCTGCCCCCACAGGTTAGCCAAACTGTCAGAGGGACAGTTGATTGATGGAAGGCTTGAGTGTCTATACCATGGGTGGCAATTTGAAGGGGAGGGCAAATGTGTGAAGATACCTCAGCTTCCGGCTGATGCCAAAATCCCTAGGACAGCTTGTGTTAAAACGTATGAAGTGAGGGACTCTCAAGGTGTTATTTGGGTGTGGATGTCCCTCAAAACACCTCCAAATGATAGTAAACTACCTTGGTTTGAGAACTTTGCAAGGCCGGGATTCAGAGACATTTCAACAGTTCATGAACTCCCTTACGATCACTCTATTCTTCTGGAGAACCTGATGGATCCTGCTCATATCCCTATCTCACATGACAGAACGGATTGGACCGCAAAAAGGGAGAATGCTCGGCCACTGAGCTTTGAGGTGACTGAACGAACTGATAGAGGGTTTGCAGGTTGGTGGGGTGCTGAGAAAGATGGGTCCAGGCCTAACTTCTTGAGGTTTGGGGCTCCGTGTGTTCTACAAAATAACAGGGAAATGGTTGATAAAAATGGTGTAACAAACTACTTCAGTGGCCTGTTCCTTTGTAGACCAACTGGGCAAGGGAAATCCATGCTTATAGTGAGGTTTGGATCGACAAGATCGTCATCTCCACTGGCAAAACTGTTTCCTGAGTGGTACTTCCATCAGAATGCATCCAAGGTTTTTGAGCAAGACATGGGATTCTTATCATCTCAGAATGAAATTCTCTTGAAAGAGAAGGTTCCAACAAAGCAACTTTATCTGAATCTGAAATCATCAGACACATGGGTTGCTGAATACAGGAAGTGGATGGACAAAGTGGGGCATGGGATGCCATATCATTTTGGTCACAGCACCATCTCTTTGCCCAAAGAACCTGCTGTGGTTGAACATGCACCCGCAGGACTCGTTGCAGGACAATCAGCTTCTTCACCTGCCAAAGGGGGCATTGGAACAATGCATGCTCCAAATTTAGCCAACAGATATTTTAGGCATGTCATACATTGCCAAGGATGTAGAACCGCAGTCAAAGCTTTCCAAGCTTGGAAAAATGCCCTTTCAGCTGTGGCAGTTACATTGGTCGGTTTGGCAATTCTAGTATCTGGGAAACAGTGGAAGGCCATTCTCTTGGCATCTGCTTCCCTGTGCTCTATTGGAGTATATGCTTGCTCAAGCGCCATTGCAATGAACACTACAAACTTTGTTAGGACACATAGGAGATTGTGA 1617 0.4731 MALVNPFVSPTRTFLPLRVSAPPNKGLRWTVYSASFKPSLRSKHATCGATADLKAAPLADSEADGAVLVVPTTEEEVKGEYDWTEEWYPLYLTKNVPEDAPLGLTVFDKQVVLFKDGNGQLHCYEDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQLPADAKIPRTACVKTYEVRDSQGVIWVWMSLKTPPNDSKLPWFENFARPGFRDISTVHELPYDHSILLENLMDPAHIPISHDRTDWTAKRENARPLSFEVTERTDRGFAGWWGAEKDGSRPNFLRFGAPCVLQNNREMVDKNGVTNYFSGLFLCRPTGQGKSMLIVRFGSTRSSSPLAKLFPEWYFHQNASKVFEQDMGFLSSQNEILLKEKVPTKQLYLNLKSSDTWVAEYRKWMDKVGHGMPYHFGHSTISLPKEPAVVEHAPAGLVAGQSASSPAKGGIGTMHAPNLANRYFRHVIHCQGCRTAVKAFQAWKNALSAVAVTLVGLAILVSGKQWKAILLASASLCSIGVYACSSAIAMNTTNFVRTHRRL 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02055 538 SUPERFAMILY Bet v1-like 188 407 - -
Vian4g02055 538 Pfam Rieske [2Fe-2S] domain 86 168 IPR017941 GO:0051537
Vian4g02055 538 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 64 486 - -
Vian4g02055 538 Gene3D - 214 406 - -
Vian4g02055 538 Gene3D - 82 211 IPR036922 GO:0051537
Vian4g02055 538 Pfam Pheophorbide a oxygenase 291 377 IPR013626 GO:0010277
Vian4g02055 538 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 87 192 IPR017941 GO:0051537
Vian4g02055 538 SUPERFAMILY ISP domain 78 200 IPR036922 GO:0051537
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02055 Vian-Chr4 37352084 37353984 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02055 - - pvu:PHAVU_009G086000g 1025.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02055 4 37352084 37353984 Vian4g02055 4 37352084 37353984 ECH