Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3542 ATGGCGTTGGTGAATCCGTTTCTGTCCCCCACTCGAAGTTCCCTACCTCTGCGCGTTTCGGCTCCGCCAAACCGAGCACTACGTTGGACTCTCTGCTCCCATTCACTCAAACCGTCGTTATCATCGTCAAGATCGAAGCGCGCCAGGTGCGGCGCCACTGCAGACATCAGAGCTGCACCTCTAGTTGACGGGGAAGCAGATCACGCGGTTCTCGTGGGTCCCACCGGCGAGGAGGAGCCAAGAGGGGACTATGACTGGACCGAGGAATGGTACCCTTTGTATCTCGCTCAGAATGTGCCCGAAGATGCACCCTTGGGTCTCAAAGTTTTTGACAAACAACTCGTCTTGTTCAAGGACGCCAATGGCCACTTTCGCTGTTACGAAGATCGCTGCCCTCACAGGTTAGCAAAACTATCCGAGGGACAGTTGATTGATGGAAAGCTTGAATGTCTATACCATGGATGGCAATTTGAAGGGGAGGGCAAATGTGTGAAGATACCTCAGCTTCCAGCTGATGCCAAAATTCCTCGGTCAGCTTGTGTTAGAACATATGAAGTGAGGGATTCTCAAGGTGTTATTTGGGTGTGGATGTCCCTGAAGACAGCTCCAAATGTTAGTAAAATACCTTGGTTTGAGAACTTTGCAAGGCCGGGGTTTCAAGATGTTTCAACAACTCATGAACTCCCTTATGATCACTCTATTCTTCTGGAGAACCTGATGGATCCTGCTCATATCCCAATCTCACATGACAGAACAGATTGGACTGCAAAAAGGGAGGATGCTCAGCCACTGTGTTTTGAGGTCACTGAACGAACTGATAGAGGGTTTGCAGGTTGGTGGGGCAGAGAGAAAGATGGGTCCATGCCTAACTTCTTGCGGTTTGAGGCTCCTTGTGTTCTACAAAACAACAGGGAAATTGTTGATAAGAATGGTGAAAAAAACTACTTCACTGGCCTGTTCCTTTGTAGACCAACTGGGCAAGGGAAATCCATGCTGGTAGTAAGGTTTGGAGGAACAAAAAGATCTCCACTGGCAAAACTGTTTCCTAAGTGGTACTTCCATCAGAATGCGAGCAAGGTGTTTGAGCAAGACATGGGATTCTTATCATCCCAGAATGAAATCCTCTTGAAAGAGAAGGTTCCAACAAAGGAACTATACCTGAATCTGAAATCATCAGACACATGGGTTGCTGAATACCGGAAGTGGATGGACAAAGTGGGGCATGGGATGCCATATCATTTTGGTCACAGCAGTATCTCTTTGCCCAAAGAGCCTGCTGTGGTTGAACATGCACCTGCTGGACTCGTTGCAGGACTATCAGCTTCCTTACCTGCCAAGGGGGGCATTGGAACAATGCATGCACCAAATTTAGCCAACAGATATTTTAGGCATGTGATACATTGCAAAGGATGTAGAACCGTCGTCAAAGCTTTCCAAGCTTGGAAAAATGCTCTTTCAGCTGTGGCTGTTGCATTAATCGCAATGGCAATTCTGGTATCTGGGACACAATGGAAGGCCCTTCTCTTGGCATCAGCATCCCTCTCCTCTATTGGAGTCTATGCTTGCTCAACCGCCATTGCAATGAATACAACAAACTTCATTAGGACACACAGGAGATTGTGA 1623 0.4769 MALVNPFLSPTRSSLPLRVSAPPNRALRWTLCSHSLKPSLSSSRSKRARCGATADIRAAPLVDGEADHAVLVGPTGEEEPRGDYDWTEEWYPLYLAQNVPEDAPLGLKVFDKQLVLFKDANGHFRCYEDRCPHRLAKLSEGQLIDGKLECLYHGWQFEGEGKCVKIPQLPADAKIPRSACVRTYEVRDSQGVIWVWMSLKTAPNVSKIPWFENFARPGFQDVSTTHELPYDHSILLENLMDPAHIPISHDRTDWTAKREDAQPLCFEVTERTDRGFAGWWGREKDGSMPNFLRFEAPCVLQNNREIVDKNGEKNYFTGLFLCRPTGQGKSMLVVRFGGTKRSPLAKLFPKWYFHQNASKVFEQDMGFLSSQNEILLKEKVPTKELYLNLKSSDTWVAEYRKWMDKVGHGMPYHFGHSSISLPKEPAVVEHAPAGLVAGLSASLPAKGGIGTMHAPNLANRYFRHVIHCKGCRTVVKAFQAWKNALSAVAVALIAMAILVSGTQWKALLLASASLSSIGVYACSTAIAMNTTNFIRTHRRL 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3542 540 SUPERFAMILY ISP domain 83 198 IPR036922 GO:0051537
Ssu1g3542 540 Pfam Pheophorbide a oxygenase 294 379 IPR013626 GO:0010277
Ssu1g3542 540 Gene3D - 217 408 - -
Ssu1g3542 540 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 90 195 IPR017941 GO:0051537
Ssu1g3542 540 Pfam Rieske [2Fe-2S] domain 89 170 IPR017941 GO:0051537
Ssu1g3542 540 PANTHER PROTEIN TIC 55, CHLOROPLASTIC 74 540 - -
Ssu1g3542 540 SUPERFAMILY Bet v1-like 191 409 - -
Ssu1g3542 540 Gene3D - 86 214 IPR036922 GO:0051537
Ssu1g3542 540 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 74 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3542 Ssu-Chr1 90327001 90329502 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3542 - - gmx:100818625 992.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3542 1 90327001 90329502 Ssu1g3542 1 90327001 90329502 ECH