Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0681 ATGGAGCTGAGAGCTAATTTGATGGCCACTCCCATTTCCACCATCTGCCTCTTGAGGTTTCTGCTGTATGCTTCCCTTCTTTCCTTGAAGAGTGGCTTTGCTATTGAAGGAAGAGAGAGTGCAGAGAGCCACCATGTCCAACCCATTCATCACAATGTTCATATCACTTCTCTCATGCCATCAAGTGCTTGCAGCCCCTCTCCCAAAGGCCATGACCAAAGGGCATCTCTAGAAGTGGTTCACAAACACGGACCATGTTCGAAACTCAGACCACACAAGGCCAATTCTCCCTCTCACACCCAGATACTCGCCCAAGACGAGTCTCGCGTCGCCTCAATTCAATCAAGGCTAGCCAAGAACCTTGCAGGTGGAAGCAATTTAAAGGCCTCTAAGGCCACCCTCCCAAGCAAGTCCGCAAGCACACTCGGATCAGGCAACTATGTAGTGACAGTAGGCCTTGGCTCACCAAAAAGAGACCTCACTTTCATATTTGACACTGGGAGTGACCTCACTTGGACTCAATGTGAGCCCTGTGTAGGGTATTGTTACCAACAACGAGAACACATCTTCGATCCCTCCACATCCCTCTCTTACTCTAACGTCTCTTGTGACTCACCATCATGCGAAAAACTCGAGTCTGCCACCGGCAACTCTCCCGGCTGCTCATCCTCCACTTGTCTTTACGGCATACGATATGGTGACGGGTCCTACTCTATTGGATTCTTTGCTAGAGAAAAGCTTTCCTTGACATCCACAGATGTGTTCAATAATTTCCAATTCGGGTGTGGCCAAAATAACCGTGGTCTATTTGGTGGCACAGCAGGGTTGCTGGGATTAGCGCGTAATCCTCTATCCCTTGTGTCTCAGACAGCTCAAAAGTATGGCAAAGTTTTCTCCTACTGCCTCCCATCTTCCAGCAGCTCAACCGGATATCTTTCCTTTGGAAGTGGTGATGGAGATTCTAAAGCAGTGAAGTTTACCCCGTCTGAGGTGAACTCAGACTACCCCTCATTTTACTTCCTGGACATGGTGGGGATAAGCGTTGGTGAACGCAAATTACCGATACCTAAATCGGTGTTTTCCACAGCAGGCACCATCATAGACTCGGGGACAGTCATAAGTCGATTGCCCCCAACAGTATACTCTAGTGTTCAGAAAGTTTTCCGGGAACTGATGTCCGATTATCCAAGGGTAAAGGGAGTTTCTATACTTGACACTTGCTATGACCTTAGCAAATATAAGACTGTGAAAGTACCCAAGATCATTCTTTACTTCAGTGGTGGTGCGGAGATGGACTTAGCTCCAGAAGGGATCATTTATGTTTTGAAGGTATCACAAGTCTGCCTGGCTTTTGCCGGAAACAGTGATGACGATGAAGTGGCCATAATAGGAAATGTGCAGCAAAAAACAATTCATGTGGTGTACGATGACGCTGAAGGGAGGGTTGGGTTCGCCCCAAGTGGCTGCAACTAA 1473 0.4779 MELRANLMATPISTICLLRFLLYASLLSLKSGFAIEGRESAESHHVQPIHHNVHITSLMPSSACSPSPKGHDQRASLEVVHKHGPCSKLRPHKANSPSHTQILAQDESRVASIQSRLAKNLAGGSNLKASKATLPSKSASTLGSGNYVVTVGLGSPKRDLTFIFDTGSDLTWTQCEPCVGYCYQQREHIFDPSTSLSYSNVSCDSPSCEKLESATGNSPGCSSSTCLYGIRYGDGSYSIGFFAREKLSLTSTDVFNNFQFGCGQNNRGLFGGTAGLLGLARNPLSLVSQTAQKYGKVFSYCLPSSSSSTGYLSFGSGDGDSKAVKFTPSEVNSDYPSFYFLDMVGISVGERKLPIPKSVFSTAGTIIDSGTVISRLPPTVYSSVQKVFRELMSDYPRVKGVSILDTCYDLSKYKTVKVPKIILYFSGGAEMDLAPEGIIYVLKVSQVCLAFAGNSDDDEVAIIGNVQQKTIHVVYDDAEGRVGFAPSGCN* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0681 490 Gene3D Acid Proteases 124 316 IPR021109 -
Vvi4g0681 490 Pfam Xylanase inhibitor C-terminal 339 485 IPR032799 -
Vvi4g0681 490 Pfam Xylanase inhibitor N-terminal 147 316 IPR032861 -
Vvi4g0681 490 ProSiteProfiles Peptidase family A1 domain profile. 147 485 IPR033121 -
Vvi4g0681 490 Gene3D Acid Proteases 319 490 IPR021109 -
Vvi4g0681 490 FunFam Aspartyl protease AED1 318 490 - -
Vvi4g0681 490 PRINTS Pepsin (A1) aspartic protease family signature 153 173 IPR001461 GO:0004190|GO:0006508
Vvi4g0681 490 PRINTS Pepsin (A1) aspartic protease family signature 365 376 IPR001461 GO:0004190|GO:0006508
Vvi4g0681 490 PRINTS Pepsin (A1) aspartic protease family signature 461 476 IPR001461 GO:0004190|GO:0006508
Vvi4g0681 490 SUPERFAMILY Acid proteases 142 489 IPR021109 -
Vvi4g0681 490 CDD cnd41_like 146 489 IPR033873 -
Vvi4g0681 490 PANTHER ASPARTYL PROTEASES 51 483 IPR001461 GO:0004190|GO:0006508
Vvi4g0681 490 FunFam Aspartyl protease AED1 124 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0681 Vvi-Chr4 7189990 7192387 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0681 138 490 Miscellaneous Gene Families AT1G44130 26.579 1.94e-22 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0681 - - vvi:100256004 954.896