Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03906 ATGGCGTTGGTGAATTCATTTCTTCTCCCCACAAAAAGCCATCTTGCTTTGCATGTTTCATCTCCACCATCCGAAACAACACTCCTTTCTACTAACCCATCTTCCAATTTCAACTTCAACTTCAACAAAGCCTTGTCATCAAGAAGAAGGAAGCAATCATGGCATGTTGCTGCTACTGCAGATATCAAAGCTGCATCAACTTTACTTGACGGGGAAGAAGATCAGAAAGTTCTAGTGGGACCTTCGAGTGAGCATGAACGCAATGGTGAGAGAGAGGTTGCAGATTATGATTGGACACAGGAATGGTACCCTTTGTACTTAACTAAGGATGTACCACATGATGCACCATTGGGTCTCAGAGTGTATGACAAGAGCATTGTTTTGTTTCGAGATGGCAATCATCAGTTTCAATGCTATGAAGATCGATGTCCCCACAGGCTAGCAAAACTATCAGAAGGCCAGTTGATTGATGGAAGGCTTGAATGCTTATATCATGGATGGCAATTCGAAGGCGAGGGAAAATGTGTCAAGATACCTCAGCTTCCAGTTGATGCCAAAATTCCCAAATCAGCATGTGTTAAAACATATAAGGTGAGGGACTCTCAAGGTGTTCTTTGGGTATGGATGTCTCCAAAGACACCTCCAAATCTAAGTAAAATACCTTGGTTTGAGAACTTAGCGAGGCCGGGGTTTCAAGATATTTCAACAACTCATGAACTACCATATGATCATTCTATTCTGCTGGAAAACTTGATGGATCCTGCTCATGTTCCGATCTCGCACGATAGAACGGATCCGACTGCAAAAAGAGAAGAAGCACAGCCACTAGGATTTGAGGTGACTGAACGAACTGACAGAGGTTTTGCAGGTTGGTGGGGACGAGAGAAAGATGGTTCTAAGCTTAACTTCTTACGTTTTGAAGCTCCTTGTGTTCTACAAAATAACAGGGAAATCATTGGTAAAAATGGTGAAGTAAACCACTTCAGTAGTGTGTTCCTTTGTAGACCAACAGGGCAAGGTAAATCCATGTTGATAGCGAGGTTTGGAGCAACCATAAGATTTCCATTAACAAATCTGTTTCCTGAATGGTACTTCCATCAAAATGCAAGCAAGGTTTTTGAACAAGACATGGGATTCTTATCATCCCAAAATGAAATTCTTTTGAAAGAGAAGGTTCCAACAAAAGAACTATACCTGAATTTAAAATCATCAGACACGTGGGTTGCCGAATACCGAAAGTGGATGGATAAAGTTGGACATGGAATGCCATATCATTTTGGCCACAGCACTATTTCATTGCCTAAAGAGCCTGCCGTGGTTGAACATGCACCTGCCGGACTTGTTGCAGGACAATCAGCTTCCTCGCCTGCAAAGGGAGGCATCGGAACTATGCATGCTCCAAATTTAGCAAATAGATATTTCAGACATGTAATACATTGTAAAGGATGTAGTACCGCTGTCAAAGCTTTTCAAACTTGGAAAAACGTCCTTTCGGCTGTGGTTGTTGCATTAGCTGCAATGGCAATTCTGGTATCTGGGAGACAATGGAAAGTCCTCTTGTTAGCATCTGCATCCTTGTGCTCTGTTGGAGTATATGCTTGTTCAACAGCTATTGCAATGAATACAACAAACTTTATTAGAGTACATAGGAGATTGTGA 1659 0.4189 MALVNSFLLPTKSHLALHVSSPPSETTLLSTNPSSNFNFNFNKALSSRRRKQSWHVAATADIKAASTLLDGEEDQKVLVGPSSEHERNGEREVADYDWTQEWYPLYLTKDVPHDAPLGLRVYDKSIVLFRDGNHQFQCYEDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQLPVDAKIPKSACVKTYKVRDSQGVLWVWMSPKTPPNLSKIPWFENLARPGFQDISTTHELPYDHSILLENLMDPAHVPISHDRTDPTAKREEAQPLGFEVTERTDRGFAGWWGREKDGSKLNFLRFEAPCVLQNNREIIGKNGEVNHFSSVFLCRPTGQGKSMLIARFGATIRFPLTNLFPEWYFHQNASKVFEQDMGFLSSQNEILLKEKVPTKELYLNLKSSDTWVAEYRKWMDKVGHGMPYHFGHSTISLPKEPAVVEHAPAGLVAGQSASSPAKGGIGTMHAPNLANRYFRHVIHCKGCSTAVKAFQTWKNVLSAVVVALAAMAILVSGRQWKVLLLASASLCSVGVYACSTAIAMNTTNFIRVHRRL 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03906 552 CDD Rieske_RO_Alpha_Tic55 86 216 - -
Vifa2g03906 552 Gene3D - 229 420 - -
Vifa2g03906 552 Gene3D - 97 225 IPR036922 GO:0051537
Vifa2g03906 552 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 33 499 - -
Vifa2g03906 552 Pfam Pheophorbide a oxygenase 306 391 IPR013626 GO:0010277
Vifa2g03906 552 SUPERFAMILY Bet v1-like 202 421 - -
Vifa2g03906 552 SUPERFAMILY ISP domain 95 215 IPR036922 GO:0051537
Vifa2g03906 552 Pfam Rieske [2Fe-2S] domain 101 182 IPR017941 GO:0051537
Vifa2g03906 552 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 102 207 IPR017941 GO:0051537
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03906 Vifa-Chr2 1140544339 1140546158 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03906 - - gmx:100808233 883.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03906 2 1140544339 1140546158 Vifa2g03906 2 1140544339 1140546158 ECH