Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0676 ATGGCTCTCCTCCAGCCATTTCTCTCCCACTCTCCCCCTCTCTCTTTCTCTCTCCCAAAGCCCACTCCATTATCACTCGTCTCCCTCTCACAATCATTGAAACCTCCCCATAAACTACTCACACAAACCTGGAGAGATTCCATCAGGTGCTGTGCTATTGCAGAGATAAGGGATGGGGTTTCACTCGGGGGAGAGGATCAGGGGGTTCTGGTGGACCCATCTAGTCAAGAAGAAGTGAGAGGAGAGAGGCACGTGGCGGAGTATGATTGGAAGGAAGAGTGGTACCCACTGTATCTCACTAAGGACATACCAGAGGATGCTCCTATGGGTCTTACTGTTTTTGATAAGCAGCTTGTGTTGTATCGTGATGGCAAGGACCTGCTTCAGTGTTACGAAGATCGATGCCCCCATAGGTTAGCAAAGCTCTCTGAAGGTCAGTTGGTTGATGGGAGACTGGAATGCTTGTATCATGGTTGGCAATTTGAAGGCGAGGGTAAATGTGTGAAGATACCTCAGCTTCCGGCTGATGCAAAAATTCCACGATCAGCTTGTGTTAAAACATATGAGGTGAAGGATTCCCAAGGAGTGGTTTGGGTGTGGATGTCACACAGGACCCCTCCAAATCCTGATAAACTGCCATGGTTTGAGAACTTTGCTAGACCAGGGTTTCGAGATACCTCGACAATTCATGAGCTTCCATATGATCATTCCATTCTTCTCGAGAACCTAATGGATCCAGCCCATGTTCCAATCTCACATGACAGAACAGACTGGAGTGCAAAGAGGGAAGATGCCCAACCACTATGTTTCAAGGTCACTGAACGAACAGACCGTGGTTTTGCTGGCTGGTGGGGCAGGGAAAAAGATGAGTCCTTGCTGAATTTCTTACGATTCGAAGCCCCATGTGTTCTTCAGAATAACCGAGAAATAGTTGATAAGAATGGGGAAAAGCACTACTTTACTGGTCTTTTCCTTTGCAGGCCATCAGGACAAGGAAAATCAATGTTGATTGTGAGGTTTGGTTCAACCAAGAGATCTCCCATAGCAAAATTGTTTCCAGAATGGTACTTCCATCAGAATGCAGGTAAGGTTTTTGAGCAAGATATGGGGTTCCTTTCCTCCCAAAATGAGATTCTAATGAAAGAGAAAGTTCCAACAAAGGAACTCTATCTCAATTTAAGGTCATCAGACACATGGGTTGCTGAATACAGGAGGTGGATGGACAAAGTAGGGCATGGAATGCCCTACCATTTCGGGCACAGCACCATTTCACTACCCCAACAGCCTGCAGTGGTGGAACATGCACCAGCAGGTTTGGTTGCCGGACTCTCGGCTTCTTCCCCAGCCAAGGGAGGGATTGGAACGATGCATGCCCCAAATCCTGCAAACCGATACTTCCGACATGTAGTTCATTGTAAAGGATGCAGAAGTGTTGTCAAAGCTTTCCAAGCATGGAAGAATGTCTTTTTCACCTTGGCTCTTGCATCAACAGCATTGGCAATTCTAGTGACCGGAAGGCAGTGGAAGGCCCTTCTGTTGGTTGGAACGGCACTAAGCTTGGCTGGAATGTATGCATGCTCAACAGTGGTTGCCATGAATACAACAAACTTTGTAAGGATCCACAGGAGATTGTGA 1635 0.4703 MALLQPFLSHSPPLSFSLPKPTPLSLVSLSQSLKPPHKLLTQTWRDSIRCCAIAEIRDGVSLGGEDQGVLVDPSSQEEVRGERHVAEYDWKEEWYPLYLTKDIPEDAPMGLTVFDKQLVLYRDGKDLLQCYEDRCPHRLAKLSEGQLVDGRLECLYHGWQFEGEGKCVKIPQLPADAKIPRSACVKTYEVKDSQGVVWVWMSHRTPPNPDKLPWFENFARPGFRDTSTIHELPYDHSILLENLMDPAHVPISHDRTDWSAKREDAQPLCFKVTERTDRGFAGWWGREKDESLLNFLRFEAPCVLQNNREIVDKNGEKHYFTGLFLCRPSGQGKSMLIVRFGSTKRSPIAKLFPEWYFHQNAGKVFEQDMGFLSSQNEILMKEKVPTKELYLNLRSSDTWVAEYRRWMDKVGHGMPYHFGHSTISLPQQPAVVEHAPAGLVAGLSASSPAKGGIGTMHAPNPANRYFRHVVHCKGCRSVVKAFQAWKNVFFTLALASTALAILVTGRQWKALLLVGTALSLAGMYACSTVVAMNTTNFVRIHRRL* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0676 544 Pfam Pheophorbide a oxygenase 298 383 IPR013626 GO:0010277
Vvi4g0676 544 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 25 489 - -
Vvi4g0676 544 Gene3D - 220 412 - -
Vvi4g0676 544 SUPERFAMILY ISP domain 87 210 IPR036922 GO:0051537
Vvi4g0676 544 Pfam Rieske [2Fe-2S] domain 93 175 IPR017941 GO:0051537
Vvi4g0676 544 SUPERFAMILY Bet v1-like 194 413 - -
Vvi4g0676 544 Gene3D - 89 218 IPR036922 GO:0051537
Vvi4g0676 544 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 94 199 IPR017941 GO:0051537
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0676 Vvi-Chr4 7106898 7110246 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0676 - - vvi:100259354 1097.03