Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0678 ATGAGGCCATTGCACTCACTCAGTCAATCTTCTTTCACCGCTTTATACAGGGCTTCAGTCAACCATTGTTTGGCGATCAAATCAGGAACAACTGCAAGCATATACACTGCCAACAATATCATAAGTGGATACGCAAAATGTGGAGAGATACGTATTGCTAGCAAGATGTTCGGTGAAACGTCGCAACGGGATGCTGTGTCTTGGAATACAATGATTGCAGGGTTTGTGAATTTGGGGAACTTTGAGACTGCACTGGAGTTTCTAAAATCCATGAAAAGATATGGGTTTGCGGTTGATGGGTATAGTTTTGGAAGTATACTTAAGGGTGTTGCTTGTGTTGGATATGTTGAGGTTGGGCAGCAAGTGCATTCCATGATGGTTAAGATGGGTTACGAGGGGAATGTGTTTGCAGGTAGCGCACTCTTAGACATGTATGCGAAATGTGAGAGAGTTGAGGATGCATTTGAGGTGTTTAAGTCTATAAATATTCGTAATTCTGTTACCTGGAATGCTTTGATTAGTGGGTATGCTCAAGTGGGTGATCGGGGGACTGCATTTTGGCTATTGGATTGTATGGAGCTGGAGGGTGTGGAGATTGACGATGGGACATTTGCTCCACTTTTGACATTGCTTGATGACCCAGATTTGCACAAATTGACAACGCAGGTTCATGCTAAAATTGTGAAGCATGGGTTGGCATCTGATACTACTGTGTGCAATGCCATAATCACAGCGTACTCAGAGTGTGGGTCCATTGAAGATGCTGAAAGAGTGTTTGATGGTGCTATTGAGACACGAGATCTAGTGACATGGAATTCTATGCTGGCTGCTTACCTAGTAAATAATCAGGAAGAGGAGGCATTTCAGCTCTTCCTTGAAATGCAAGTGCTTGGGTTTGAACCAGACATCTATACATACACTAGTGTCATAAGTGCTGCTTTTGAAGGTTCACATCAAGGCCAAGGAAAGTCCTTACATGGATTGGTAATCAAAAGGGGATTGGAATTTTTGGTACCGATCTCTAATTCATTGATTGCCATGTATCTCAAATCACATAGCAAATCCATGGATGAAGCATTAAATATATTTGAATCCTTGGAAAACAAGGACCATGTCTCTTGGAATTCCATTTTGACAGGATTCTCACAAAGTGGGTTAAGTGAAGATGCATTGAAGTTCTTTGAGAATATGCGATCTCAGTACGTAGTGATCGATCACTATGCCTTTTCTGCTGTCCTTAGGTCTTGCTCGGATTTAGCAACTCTCCAGTTGGGTCAACAAGTTCATGTCCTAGTACTTAAATCAGGCTTCGAGCCAAATGGATTCGTTGCCAGTTCATTGATATTTATGTATTCGAAGTGTGGTGTCATTGAAGATGCTAGAAAATCATTTGATGCAACACCAAAAGATAGCTCAATCGCATGGAACTCACTCATATTTGGTTATGCGCAACACGGGCGAGGCAAAATTGCACTTGATCTCTTCTTCTTAATGAAAGATAGAAGAGTGAAGCTGGATCATATAACTTTTGTTGCAGTTCTAACTGCATGCAGCCACATTGGATTGGTAGAAGAGGGTTGGTCTTTCCTAAAATCTATGGAATCTGACTATGGGATTCCACCTCGGATGGAGCATTATGCTTGTATGATTGATCTGCTTGGGCGGGCTGGGCGTCTAGATGAGGCAAAAGCATTAATTGAGGCAATGCCATTTGAGCCAGATGCAATGGTGTGGAAAACACTACTTGGTGCATGTAGGACTTGTGGTGACATAGAATTGGCGAGTCAGGTGGCAAGCCATCTATTAGAACTAGAGCCTGAAGAGCATTGCACTTATGTTCTACTCTCCAGCATGTTTGGGCATCTCAGGAGGTGGAACGAAAAGGCTAGCATAAAGAGGTTGATGAAGGAGAGAGGGGTAAAAAAGGTTCCTGGCTGGAGTTGGATAGAGGTTAAAAATGAGGTGCGTTCCTTCAATGCTGAGGATCGATCCCACCCTAATTGTGAAGAGATATACCTGAGATTAGGAGAATTAATGGAGGAAATCAGGAGGTTGGATTATGTTGCTAATTCAGAGTTTTTACAGAACAACCTTCTATCTGATACACTGTCAGGAGCTATTCCAGGTATAGTACAGCTTGTAGGTCTCTCTTCATTCCAGAGTCCCCTATATGGCTGGCAAAGATTGGCCGAGAGAATGACTGTGAACCTTAGACGAGAAAAAGGCGATATTTCTCAGGAAGCAGCTGATATATTTTGGGCATTTTGA 2268 0.425 MRPLHSLSQSSFTALYRASVNHCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLVTWNSMLAAYLVNNQEEEAFQLFLEMQVLGFEPDIYTYTSVISAAFEGSHQGQGKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIPPRMEHYACMIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTLLGACRTCGDIELASQVASHLLELEPEEHCTYVLLSSMFGHLRRWNEKASIKRLMKERGVKKVPGWSWIEVKNEVRSFNAEDRSHPNCEEIYLRLGELMEEIRRLDYVANSEFLQNNLLSDTLSGAIPGIVQLVGLSSFQSPLYGWQRLAERMTVNLRREKGDISQEAADIFWAF* 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0678 755 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 122 215 - -
Vvi4g0678 755 SUPERFAMILY TPR-like 162 625 IPR011990 GO:0005515
Vvi4g0678 755 Gene3D Tetratricopeptide repeat domain 215 318 IPR011990 GO:0005515
Vvi4g0678 755 Gene3D Tetratricopeptide repeat domain 4 113 IPR011990 GO:0005515
Vvi4g0678 755 FunFam pentatricopeptide repeat-containing protein At2g33680 444 670 - -
Vvi4g0678 755 FunFam Putative pentatricopeptide repeat-containing protein 216 321 - -
Vvi4g0678 755 NCBIfam pentatricopeptide repeat 474 506 IPR002885 -
Vvi4g0678 755 NCBIfam pentatricopeptide repeat 66 99 IPR002885 -
Vvi4g0678 755 NCBIfam pentatricopeptide repeat 269 303 IPR002885 -
Vvi4g0678 755 NCBIfam pentatricopeptide repeat 372 400 IPR002885 -
Vvi4g0678 755 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 471 505 IPR002885 -
Vvi4g0678 755 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 199 IPR002885 -
Vvi4g0678 755 Pfam PPR repeat family 267 312 IPR002885 -
Vvi4g0678 755 Pfam PPR repeat family 64 111 IPR002885 -
Vvi4g0678 755 Pfam PPR repeat family 369 416 IPR002885 -
Vvi4g0678 755 Pfam PPR repeat family 472 518 IPR002885 -
Vvi4g0678 755 Gene3D Tetratricopeptide repeat domain 319 467 IPR011990 GO:0005515
Vvi4g0678 755 Gene3D Tetratricopeptide repeat domain 471 678 IPR011990 GO:0005515
Vvi4g0678 755 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 64 98 IPR002885 -
Vvi4g0678 755 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 397 696 IPR046960 GO:0003723|GO:0009451
Vvi4g0678 755 Pfam PPR repeat 546 569 IPR002885 -
Vvi4g0678 755 Pfam PPR repeat 139 160 IPR002885 -
Vvi4g0678 755 Pfam PPR repeat 238 260 IPR002885 -
Vvi4g0678 755 Pfam PPR repeat 167 197 IPR002885 -
Vvi4g0678 755 Pfam PPR repeat 36 59 IPR002885 -
Vvi4g0678 755 Coils Coil 349 369 - -
Vvi4g0678 755 Pfam E motif 590 650 IPR046848 -
Vvi4g0678 755 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Vvi4g0678 755 FunFam Putative pentatricopeptide repeat-containing protein 4 121 - -
Vvi4g0678 755 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Vvi4g0678 755 FunFam Pentatricopeptide repeat-containing protein At3g26782, mitochondrial 322 429 - -
Vvi4g0678 755 Gene3D Tetratricopeptide repeat domain 114 214 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0678 Vvi-Chr4 7150219 7155438 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0678 38 698 Glycoside Hydrolase AT3G49170 35.067 1.25e-131 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0678 - - vvi:100249134 1372.07