Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi19g0350 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0351 . . . . . . Aed1g0659 . Aev10g2385 . Ahy18g1245 Ahy13g1803 Aip08g01322 Aip03g01994 . . Amo18g1439 Amo13g2270 Apr2g0348 . . . . . . . Bva09g00804 Bva07g01803 Car01g02096 . Cca10g01049 Cca04g01369 . . Dod10g1049 . . . . . . . Gma12g02062 Gma13g02496 . . . . . . . . Lal1g0556 . . . . . . . . . . . . . . . . . . . . Lja3g4486 Mal4g1025 . . . . . . . Mtr2g2700 . . . . . . . . . . . . . . . . . . . . . . . . . Ssu8g1091 Ssu3g1870 . Sto4g2916 Tpr7g3603 . . . Tsu02g04484 . . . . . . . . . . . . Vra2g1261
Vvi19g0352 . . . . . . . . . . . Ahy13g1799 . Aip03g01990 . . . . . . . . . . . . Bva09g00803 Bva09g00803 . . . . . . . Dod03g1897 . . . . . . . . . . . . Lal9g0490 . . . . . Lan8g1414 . . . . . . . . . . . . . . . . . . . . Mal5g2400 . . . . . . . Mtr8g1697 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr7g2029 . . . Tsu08g02023 . . . . . . . . . . . .
Vvi19g0353 . . . . . . . . . . Ahy18g2714 . Aip08g03095 . . . . . Apr2g0347 . . . . . . . Bva09g00802 Bva07g01804 Car01g02097 . Cca10g01048 . . . . . . . . . . . . . . . . . . . . Lal20g0298 . . . . . . . . . . . . . . . . . . . . . Lja3g4485 Mal4g1024 . . . . . . . Mtr2g2701 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto4g2917 Tpr7g3604 . . . Tsu02g04485 . . . . . . . . . . . . .
Vvi19g0354 . . . . . . Aed1g0661 . Aev10g2382 Aev04g2494 Ahy18g1242 Ahy13g1798 Aip08g01317 Aip03g01989 . . Amo18g1431 Amo13g2266 Apr2g0346 Apr5g0070 . . . . . . Bva09g00800 Bva07g01805 Car01g02098 . Cca10g01047 . . . Dod10g1051 Dod03g1898 . . . . . . Gma12g02061 . . . . . . Lal1g1655 Lal2g0554 Lal20g0297 . . . . . . . . . . . . . . . . . . . . . Lja3g4484 Mal4g1023 Mal5g2405 . . . . . . Mtr2g2702 Mtr8g1698 . . . . . . Psa5g5681 . . . . . . . . . . . . . . . . . Ssu8g1085 . . . Tpr7g3605 Tpr7g2026 . . Tsu02g04487 Tsu08g02022 . . . . . . . . . . . .
Vvi19g0355 . . . . . . Aed1g0662 . Aev10g2377 . Ahy18g1237 . Aip08g01311 . . . . . Apr2g0345 Apr5g0067 . . . . . . . Bva07g01812 . Car07g02146 Cca10g01045 . . . Dod10g1055 . . . . . . . Gma12g02060 . . . . . . . Lal2g0553 . . . . . . . . . . . . . . . . . . . . . . Lja3g4482 . Mal5g2412 . . . . . . . Mtr8g1701 . . . . . . . . . . . . . . . . . . . . . . . . . . Sto7g0320 . . Tpr7g2024 . . . Tsu08g02012 . . . . . . . . . . . .
Vvi19g0356 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0357 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0358 Acco06g2312 . . . Adu10g00349 . Aed1g0664 Aed10g1969 Aev10g2375 . Ahy18g1235 . Aip08g01309 . . . Amo18g1421 . Apr2g0343 . Arst10g00455 . Bach7g00714 . Bisa07g0774 . Bva09g00796 Bva07g01814 Car01g02099 . Cca10g01044 Cca09g01339 Dere02g2549 . Dod10g1057 . . . Glsi11g2500 . . . Gma12g02058 . . . . . . Lal1g1657 . . . . . . . . . . . . Lasa1g05081 . . . Lele15g1831 Lele16g1860 . . . . . . Mal4g1021 . . . . . . . Mtr2g2703 . . . Phco11g00332 . . . Psa5g5682 Psa5g6191 . . Pte19g00891 Pte2g00769 . . Pumo2g00916 . Pvu6g1996 . Rops11g00472 . Seca6g04978 . Spst6g00693 . Ssu8g1082 Ssu5g1782 Sto7g0321 . Tpr7g3606 . . . Tsu02g04488 . Vian6g01846 . . . Vimu2g00569 . Viun6g02882 . Vivi5g04234 . . Vra7g1744
Vvi19g0359 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 2708 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Aev Aev10g2375 Chr10 23430026 23432448 +
Ahy Ahy18g1235 Chr18 21196779 21199228 +
Aip Aip08g01309 Chr08 20211556 20215187 +
Amo Amo18g1421 Chr18 26645632 26649308 +
Dod Dod10g1057 Chr10 28896814 28899449 -
Psa Psa5g6191 Chr5 529603478 529606909 +
Pte Pte19g00891 Chr19 7516614 7520014 -
Sto Sto7g0321 Chr7 2249660 2252165 -
Vvi Vvi19g0350 Chr19 3776474 3777334 +
Vvi Vvi19g0351 Chr19 3777470 3778862 -
Aed Aed1g0659 Chr1 7888884 7900449 -
Aev Aev10g2385 Chr10 23494053 23495547 +
Ahy Ahy18g1245 Chr18 21661937 21663443 +
Ahy Ahy13g1803 Chr13 29300165 29301419 +
Aip Aip08g01322 Chr08 20667543 20669120 +
Aip Aip03g01994 Chr03 28220806 28222269 +
Amo Amo18g1439 Chr18 27127778 27129329 +
Amo Amo13g2270 Chr13 38775296 38776791 +
Apr Apr2g0348 Chr2 4155099 4156895 +
Bva Bva09g00804 Chr09 4131163 4132635 +
Bva Bva07g01803 Chr07 16446211 16447467 -
Car Car01g02096 Chr01 46404195 46405574 -
Cca Cca10g01049 Chr10 12871606 12873244 +
Cca Cca04g01369 Chr04 17845023 17847465 +
Dod Dod10g1049 Chr10 28728812 28730955 -
Gma Gma12g02062 Chr12 41333103 41351763 +
Gma Gma13g02496 Chr13 39824775 39827551 -
Lal Lal1g0556 Chr1 3582678 3587943 +
Lja Lja3g4486 Chr3 86602513 86604370 +
Mal Mal4g1025 Chr4 14203853 14205277 +
Mtr Mtr2g2700 Chr2 40099393 40100806 -
Ssu Ssu8g1091 Chr8 19206320 19207872 -
Ssu Ssu3g1870 Chr3 58306676 58308435 -
Sto Sto4g2916 Chr4 29699519 29700548 -
Tpr Tpr7g3603 Chr7 44642538 44644153 -
Tsu Tsu02g04484 Chr02 53724935 53726149 -
Vra Vra2g1261 Chr2 18256426 18258568 +
Vvi Vvi19g0352 Chr19 3781502 3783949 +
Ahy Ahy13g1799 Chr13 29239424 29245489 -
Aip Aip03g01990 Chr03 28167420 28170775 -
Bva Bva09g00803 Chr09 4126615 4129633 -
Bva Bva09g00803 Chr09 4126615 4129633 -
Dod Dod03g1897 Chr03 40401838 40408655 -
Lal Lal9g0490 Chr9 3286662 3291363 -
Lan Lan8g1414 Chr8 21207167 21211285 +
Mal Mal5g2400 Chr5 65685105 65688252 +
Mtr Mtr8g1697 Chr8 25059577 25063010 +
Tpr Tpr7g2029 Chr7 25201218 25204897 -
Tsu Tsu08g02023 Chr08 26477139 26480610 -
Vvi Vvi19g0353 Chr19 3785564 3802323 -
Ahy Ahy18g2714 Chr18 130463626 130467149 +
Aip Aip08g03095 Chr08 120941334 120944682 +
Apr Apr2g0347 Chr2 4145061 4153450 +
Bva Bva09g00802 Chr09 4118389 4125778 +
Bva Bva07g01804 Chr07 16453223 16458318 -
Car Car01g02097 Chr01 46407452 46425248 -
Cca Cca10g01048 Chr10 12859619 12869370 +
Lal Lal20g0298 Chr20 2279744 2289842 +
Lja Lja3g4485 Chr3 86590413 86599855 +
Mal Mal4g1024 Chr4 14186617 14197576 +
Mtr Mtr2g2701 Chr2 40103239 40114667 -
Sto Sto4g2917 Chr4 29702988 29715877 -
Tpr Tpr7g3604 Chr7 44646882 44656836 -
Tsu Tsu02g04485 Chr02 53728886 53739074 -
Vvi Vvi19g0354 Chr19 3814626 3826657 +
Aed Aed1g0661 Chr1 7913889 7914374 +
Aev Aev10g2382 Chr10 23464418 23469685 -
Aev Aev04g2494 Chr04 24642271 24648406 -
Ahy Ahy18g1242 Chr18 21496646 21503889 -
Ahy Ahy13g1798 Chr13 29134415 29150990 -
Aip Aip08g01317 Chr08 20506018 20512370 -
Aip Aip03g01989 Chr03 28012406 28038911 -
Amo Amo18g1431 Chr18 26962622 26969615 -
Amo Amo13g2266 Chr13 38620327 38636909 -
Apr Apr2g0346 Chr2 4115188 4123131 -
Apr Apr5g0070 Chr5 647268 657719 -
Bva Bva09g00800 Chr09 4103649 4110366 -
Bva Bva07g01805 Chr07 16462888 16469546 +
Car Car01g02098 Chr01 46439031 46453122 +
Cca Cca10g01047 Chr10 12834397 12843697 -
Dod Dod10g1051 Chr10 28777335 28786222 +
Dod Dod03g1898 Chr03 40441993 40457656 +
Gma Gma12g02061 Chr12 41306291 41315704 -
Lal Lal1g1655 Chr1 18964428 18973707 +
Lal Lal2g0554 Chr2 3340349 3348661 -
Lal Lal20g0297 Chr20 2262554 2267901 -
Lja Lja3g4484 Chr3 86576728 86586082 -
Mal Mal4g1023 Chr4 14149981 14154289 -
Mal Mal5g2405 Chr5 65802291 65812630 +
Mtr Mtr2g2702 Chr2 40118836 40123374 +
Mtr Mtr8g1698 Chr8 25085958 25101967 +
Psa Psa5g5681 Chr5 493295517 493299363 +
Ssu Ssu8g1085 Chr8 19057576 19066294 -
Tpr Tpr7g3605 Chr7 44662944 44668283 +
Tpr Tpr7g2026 Chr7 25089894 25101955 -
Tsu Tsu02g04487 Chr02 53755957 53761321 +
Tsu Tsu08g02022 Chr08 26456098 26471066 -
Vvi Vvi19g0355 Chr19 3837685 3838117 -
Aed Aed1g0662 Chr1 7940319 7940610 -
Aev Aev10g2377 Chr10 23436250 23436805 +
Ahy Ahy18g1237 Chr18 21217669 21219029 +
Aip Aip08g01311 Chr08 20227446 20228653 +
Apr Apr2g0345 Chr2 4111270 4112118 +
Apr Apr5g0067 Chr5 629152 630064 +
Bva Bva07g01812 Chr07 16508031 16508842 -
Car Car07g02146 Chr07 28415526 28415992 +
Cca Cca10g01045 Chr10 12814795 12815685 +
Dod Dod10g1055 Chr10 28889517 28889955 -
Gma Gma12g02060 Chr12 41301824 41302207 +
Lal Lal2g0553 Chr2 3338476 3339246 +
Lja Lja3g4482 Chr3 86569373 86569817 +
Mal Mal5g2412 Chr5 66072266 66072701 +
Mtr Mtr8g1701 Chr8 25161518 25162232 -
Sto Sto7g0320 Chr7 2247683 2248277 -
Tpr Tpr7g2024 Chr7 25054863 25055565 +
Tsu Tsu08g02012 Chr08 26334317 26334774 +
Vvi Vvi19g0356 Chr19 3843817 3843981 +
Vvi Vvi19g0357 Chr19 3845841 3846092 -
Vvi Vvi19g0358 Chr19 3851624 3854741 -
Acco Acco06g2312 Chr06 18667000 18669982 +
Adu Adu10g00349 Chr10 4064969 4067589 -
Aed Aed1g0664 Chr1 7943941 7947820 -
Aed Aed10g1969 Chr10 23876648 23881339 -
Aev Aev10g2375 Chr10 23430026 23432448 +
Ahy Ahy18g1235 Chr18 21196779 21199228 +
Aip Aip08g01309 Chr08 20211556 20215187 +
Amo Amo18g1421 Chr18 26645632 26649308 +
Apr Apr2g0343 Chr2 4102607 4106137 +
Arst Arst10g00455 Chr10 3714724 3717345 -
Bach Bach7g00714 Chr7 18117109 18120678 -
Bisa Bisa07g0774 Chr07 20245838 20249217 +
Bva Bva09g00796 Chr09 4093134 4095904 +
Bva Bva07g01814 Chr07 16512727 16515949 -
Car Car01g02099 Chr01 46458729 46463032 -
Cca Cca10g01044 Chr10 12806577 12810277 +
Cca Cca09g01339 Chr09 36403258 36407848 -
Dere Dere02g2549 Chr02 28142530 28145998 +
Dod Dod10g1057 Chr10 28896814 28899449 -
Glsi Glsi11g2500 Chr11 17695290 17698803 -
Gma Gma12g02058 Chr12 41291279 41294719 +
Lal Lal1g1657 Chr1 18977940 18981483 -
Lasa Lasa1g05081 Chr1 821609334 821611262 +
Lele Lele15g1831 Chr15 11188386 11191536 +
Lele Lele16g1860 Chr16 11121265 11127672 +
Mal Mal4g1021 Chr4 14052806 14055969 +
Mtr Mtr2g2703 Chr2 40125212 40128905 -
Phco Phco11g00332 Chr11 2152275 2154802 +
Psa Psa5g5682 Chr5 493311447 493314551 -
Psa Psa5g6191 Chr5 529603478 529606909 +
Pte Pte19g00891 Chr19 7516614 7520014 -
Pte Pte2g00769 Chr2 6524988 6528040 +
Pumo Pumo2g00916 Chr2 13807490 13810472 -
Pvu Pvu6g1996 Chr6 29994535 29997338 -
Rops Rops11g00472 Chr11 6353249 6356686 +
Seca Seca6g04978 Chr6 117169654 117172687 -
Spst Spst6g00693 Chr6 6248712 6254888 +
Ssu Ssu8g1082 Chr8 19023704 19026938 +
Ssu Ssu5g1782 Chr5 53368533 53373158 -
Sto Sto7g0321 Chr7 2249660 2252165 -
Tpr Tpr7g3606 Chr7 44683020 44686948 -
Tsu Tsu02g04488 Chr02 53764965 53768432 -
Vian Vian6g01846 Chr6 35863730 35867733 -
Vimu Vimu2g00569 Chr2 3306203 3308856 +
Viun Viun6g02882 Chr6 32195118 32198137 -
Vivi Vivi5g04234 Chr5 139259077 139262883 -
Vra Vra7g1744 Chr7 36250181 36254755 +
Vvi Vvi19g0359 Chr19 3856269 3856472 -