Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02097 ATGGAAGACGCTGAAGAAAACACACTTCGCGTTCTGATAGCAACGGATTGTCACTTAGGTTACATGGAGAAAGACGAAGTTCGACGCCACGACTCATTCCAAGCTTTCGAAGAAATTTGTTCAATAGCTGAAAAGAAACACGTCGATTTCATGCTGCTTGGTGGTGACCTTTTCCATGAAAATAAACCTTCTAGGTCAACTTTAGTTAAAGCTATTGAGATTCTCCGTCGTTATTGCCTCAACGATCGTCCTGTTCCTTTTCAAGTTGTTAGCGACCAGACTCTCAATTTTCAGAATACGTTTGGTCATGTAAATTATGAAGATCCTCATTTCAATGTTGGTTTGCCTGTATTTACCATTCATGGAAATCATGACGATCCAGCTGGCGTGGACAACCTTTCTGTAGTTGATATTCTCTCAGCATGTAATCTAGTCAACTACTTTGGAAAAACGGTTCTTGGGGGTTCTGGTGTCGGTCAGATCACTATCCACCCTATTCTTATAAAGAAGGGTTCAACAGCTGTAGCACTATATGGTCTGGGGAATATTAGAGATGAAAGACTTAATAGGATGTTTCAAACACCACACGCGGTGCAGTGGATGCGACCTGAATCTCAGGAAGGGTGTGAAGTTTCTGATTGGTTCAACATTCTGGTACTTCATCAGAACAGAGTGAAAACAAATCCCAAAAATGCAATTAATGAGCACTTCCTGCCACGCTTCCTAGACTTCATTGTGTGGGGGCATGAGCATGAATGTTTGGTTGACCCACAGGAAGTTCCAGGGATGGGATTTCACATTTCACAACCAGGGTCATCAGTTGCAACATCACTTATTGATGGAGAATCGAAGCCAAAACATGTACTTCTTTTAGAAATTAAGGGAAATCAATATCGCCCTACTAAGATACCTTTAACATCTGTGCGGCCTTTTGAGTATACAGAGGTAATACTAAAAGATATGCCTGATATTGATTCCCATGATCAGAATTCTATTCTTGAACATCTCGACAAAGTGGTCGAGAAACTTCTAGAAAAATCTAGTAAGAAGGTTGTCCATAGAGCAGAGCTTAAGCTTCCACTAATACGTATCAAGGTAGATTACTCTGGATTTATGACTATAAATCCTCAAAGATTTGGGCAGAAATATGTAGGAAAGGTTGCGAACCCCCAAGACATTCTTATATTTTCAAAGGCATCAAAATTGGAGAAGGGTGGAGGCAAAATTGATGATTCGGAACGACTTCGTCCAGAAGAATTAAATCAACAGAACATAGAGGCTTTGGTTGCTGAAAGTAATCTGAAAATGGAGATACTTCCAGTCAATGATTTGGATGTTGCTTTACACAATTTTGTGAACAAGGATGATAAAATGGCATTTTACTCTTGTGTACAGTACAATATTGATGAAACGCGAAATAAAATTGCCAAGGATTCAAATGACCGGAAGTTTGATGAGGAAGATTTAGTTGTTAAAGTTGAAGAGTGCTTTGAGGAACGTGTCAAGGAGCGATCAACACGCTCCAAGGGACCCACACAGTTCACTCCTGGTGCTCAGTCCTTTGAGGGTTTTCAAGGCAGAAGTGCTGCTGGAGCAGATAGTGCAGTTTCCTTCAGCGACGATGAAGATGCCATGCCAATATCAGCCTCAAAGCAAAGCACCAGAGGTCGGAAAGGAGCCTCTGCCTCTCAAACTACAACcagaggaaggggcaggggcaggggtaggggtaggggcaaggATTCCGGCACCTTGAAGCAGACAACCCTTGATGGAGCTTTAGGGTTTCGCCATTCTCAAAGGTCTGCATCAACTTCCATCCAACATGGTGCTGATGATGGGGATAATATGGCTTCTGCTTCAAGTGACGATGCCAAAGGAAATGCAGTCGAAGAGATTGATGACAGTTCGGAAAACGAGTCCAATCTACCGACACGTAAAAGGGCAGCTCCAAAGGGAAGAGGTAGAGGTTCTACACAGTCTTCTAAACGGGGGAGGAAAACAGATAACTCTTCAGTCCATAGAATGCTCATGAACAATgatgacgacgacgacgatgatgacAATCTTCAAAAGAGATTAAATTCGTCTCAACCTCGGgtgaccagaaactatggagctctaagaaggtga 2133 0.399 MEDAEENTLRVLIATDCHLGYMEKDEVRRHDSFQAFEEICSIAEKKHVDFMLLGGDLFHENKPSRSTLVKAIEILRRYCLNDRPVPFQVVSDQTLNFQNTFGHVNYEDPHFNVGLPVFTIHGNHDDPAGVDNLSVVDILSACNLVNYFGKTVLGGSGVGQITIHPILIKKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPESQEGCEVSDWFNILVLHQNRVKTNPKNAINEHFLPRFLDFIVWGHEHECLVDPQEVPGMGFHISQPGSSVATSLIDGESKPKHVLLLEIKGNQYRPTKIPLTSVRPFEYTEVILKDMPDIDSHDQNSILEHLDKVVEKLLEKSSKKVVHRAELKLPLIRIKVDYSGFMTINPQRFGQKYVGKVANPQDILIFSKASKLEKGGGKIDDSERLRPEELNQQNIEALVAESNLKMEILPVNDLDVALHNFVNKDDKMAFYSCVQYNIDETRNKIAKDSNDRKFDEEDLVVKVEECFEERVKERSTRSKGPTQFTPGAQSFEGFQGRSAAGADSAVSFSDDEDAMPISASKQSTRGRKGASASQTTTRGRGRGRGRGRGKDSGTLKQTTLDGALGFRHSQRSASTSIQHGADDGDNMASASSDDAKGNAVEEIDDSSENESNLPTRKRAAPKGRGRGSTQSSKRGRKTDNSSVHRMLMNNDDDDDDDDNLQKRLNSSQPRVTRNYGALRR 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02097 710 PIRSF DSB_repair_MRE11 1 699 IPR003701 GO:0004520|GO:0006302|GO:0008296|GO:0030870
Car01g02097 710 SUPERFAMILY Metallo-dependent phosphatases 9 354 IPR029052 -
Car01g02097 710 MobiDBLite consensus disorder prediction 582 612 - -
Car01g02097 710 Gene3D Mre11, capping domain 310 406 IPR038487 -
Car01g02097 710 PANTHER DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11 4 685 - -
Car01g02097 710 Pfam Mre11 DNA-binding presumed domain 299 451 IPR007281 GO:0004519|GO:0005634|GO:0006302|GO:0030145
Car01g02097 710 SMART Mre11_DNA_bind_2 298 451 IPR007281 GO:0004519|GO:0005634|GO:0006302|GO:0030145
Car01g02097 710 MobiDBLite consensus disorder prediction 627 647 - -
Car01g02097 710 MobiDBLite consensus disorder prediction 546 570 - -
Car01g02097 710 MobiDBLite consensus disorder prediction 500 710 - -
Car01g02097 710 TIGRFAM mre11: DNA repair protein (mre11) 6 400 IPR003701 GO:0004520|GO:0006302|GO:0008296|GO:0030870
Car01g02097 710 CDD MPP_Mre11_N 10 278 IPR041796 -
Car01g02097 710 Pfam Calcineurin-like phosphoesterase 9 253 IPR004843 GO:0016787
Car01g02097 710 MobiDBLite consensus disorder prediction 508 522 - -
Car01g02097 710 Gene3D - 4 309 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02097 Car-Chr1 46407452 46425248 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02097 K10865 - gmx:100801335 1201.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02097 01 46407452 46425248 Car01g02097 01 46407452 46425248 ECH