Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g1024 ATGGCGAACGCTGAAGAAAACACGCTTCGAATCCTAATAGCGACTGATTGTCATCTAGGTTACATGGAAAAGGACGAAGTTCGACGCCACGATTCGTTCCAAGCATTCGAAGAGATTTGCTCCATAGCGGAACAGAAGCACGTCGATTTCATGCTACTCGGTGGTGACCTTTTCCATGAAAATAAACCTTCTAGGTCAACTTTAGTCAAAGCTATTGAGATTCTAAGGAGATATTGTCTTAATGATCGTCCTGTTCCTTTTCAAGTTGTTAGCGACCAGACTCTCAATTTTCAGAATACGTTTGGCCATGTAAATTATGAAGATCCTCATTTCAATGTTGGTTTGCCTGTGTTTACTATTCATGGAAATCATGATGATCCTGCTGGAGTGGACAACCTTTCTGTAGTTGATATTCTCTCAGCATGTAATCTAGTCAACTACTTTGGAAAAACGGTTCTTGGGGGTTCTGGTGTTGGTCAGATCACTATCAACCCTATTCTTATAAAGAAGGGTTCAACAGCTGTAGCTTTATATGGCCTGGGAAACATTAGAGATGAAAGACTTAATAGGATGTTTCAAACACCGCATGCTGTGCAGTGGATGCGACCTGAATCCCAGGAAGGGTGTGAAGTTTCTGATTGGTTCAACATTCTGGTACTTCATCAGAACAGAGTGAAAACAAATCCGAAAAATGCAATAAATGAGCACTTCCTGCCACGCTTCCTAGACTTCATTGTGTGGGGGCATGAGCATGAATGTTTGGTTGACCCACAGGAAGTTCCAGGGATGGGATTTCACATTTCACAACCAGGGTCGTCGGTTGCAACATCACTTATTGATGGAGAATCGAAGCCAAAACATGTACTTCTTTTAGAAATTAAGGGAAATCAGTATCGCCCTACTAAAATACCTTTAACATCTGTGCGACCTTTTGAGTATACAGAGATAGTACTAAAAGATATGCCTGATATTGACTCCAATGATCAGAATTCTATTCTTGAACATCTCGACAAAGTGGTCGAGAAGCTTCTAGAAAAATCTAGTAAGAAGGTTGTCCAAAGAGCAGAACTTAAGCTTCCACTAGTACGTATCAAGGTAGATTACTCTGGATTTATGACCATAAACCCTCAAAGATTTGGGCAGAAATATGTAGGGAAGGTTGCAAACCCGCAAGACATTCTTATATTTTCAAAGGCATCAAAATTGGAGAAGGGTGTAGGCAAAATTGAGGATTCAGAACGACTTCGTCCAGAAGAATTAAATCAACAGAACATAGAGGCTTTGGTTGCTGAGAATAATCTGAAAATGGAGATACTTCCAGTCAATGATTTGGATATTGCTTTACACAATTTTGTGAACAAGGATGATAAAATGGCATTTTACACTTGTGTACAGTACAATATTGATGAAACACGGAATAAAATTGCTAAGGATTCAAATGAGCCGAAGTTTGATGTGGAAGATTTAGTTGTTAAAGTTGGAGAGTGCTTTGAGGAACGTGTTAAGGAACGATCCACACGCTCCAAGGGATCTTCACAGTTCACTCCTGGTGCTCAGTCCTTTGAGGGTTTTCAAGGCAGAAGTGCTGCTGGAGCTGATAGTGCAGTTTCCTTCAGTGATGATGAAGATGCCATGCCAACATCGAGCTCAAGACCAAGCACCAGAGGTCGGAAAGCATCCACCGCATCTCAAACTACAACCAGAGGAAGGGGCAGGGGTAGGGGCAGAGGCAGAGGCAAGGATTCCAGCACCTTGAAGCAGACAACTCTTGATGGAGCTTTAGGGTTTCGCAATTCTCAAAGGTCTGCATCAGTTGCTGCAGCAACTGCCATCCAAAGTGGTGCTGATGATGGGGATAGTGACGATGCCATAGGAAATGCGGTTGAAGAGATTGATGACAGTTCGGACAATGAATCCAATCTACCGGCACGGAAAAGGGCTGCTCCAAAGGGAAGAGGTAGAGGTGCTACACAGTCTTCTAAACGGGGGAGGAAATCAGATAACTCTTCAATCCATAGAATGCTCATGAACAATGATGACGACGACGACGATGATGACAATCCTCAAAAGAGATTAAATACGTCTCAACCTCGGGTGACAAGAAACTATGGAGCTCTAAGAAGATGA 2127 0.4241 MANAEENTLRILIATDCHLGYMEKDEVRRHDSFQAFEEICSIAEQKHVDFMLLGGDLFHENKPSRSTLVKAIEILRRYCLNDRPVPFQVVSDQTLNFQNTFGHVNYEDPHFNVGLPVFTIHGNHDDPAGVDNLSVVDILSACNLVNYFGKTVLGGSGVGQITINPILIKKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPESQEGCEVSDWFNILVLHQNRVKTNPKNAINEHFLPRFLDFIVWGHEHECLVDPQEVPGMGFHISQPGSSVATSLIDGESKPKHVLLLEIKGNQYRPTKIPLTSVRPFEYTEIVLKDMPDIDSNDQNSILEHLDKVVEKLLEKSSKKVVQRAELKLPLVRIKVDYSGFMTINPQRFGQKYVGKVANPQDILIFSKASKLEKGVGKIEDSERLRPEELNQQNIEALVAENNLKMEILPVNDLDIALHNFVNKDDKMAFYTCVQYNIDETRNKIAKDSNEPKFDVEDLVVKVGECFEERVKERSTRSKGSSQFTPGAQSFEGFQGRSAAGADSAVSFSDDEDAMPTSSSRPSTRGRKASTASQTTTRGRGRGRGRGRGKDSSTLKQTTLDGALGFRNSQRSASVAAATAIQSGADDGDSDDAIGNAVEEIDDSSDNESNLPARKRAAPKGRGRGATQSSKRGRKSDNSSIHRMLMNNDDDDDDDDNPQKRLNTSQPRVTRNYGALRR* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g1024 708 SUPERFAMILY Metallo-dependent phosphatases 9 346 IPR029052 -
Mal4g1024 708 Gene3D - 4 309 IPR029052 -
Mal4g1024 708 Gene3D Mre11, capping domain 310 406 IPR038487 -
Mal4g1024 708 MobiDBLite consensus disorder prediction 582 609 - -
Mal4g1024 708 CDD MPP_Mre11_N 10 278 IPR041796 -
Mal4g1024 708 PIRSF DSB_repair_MRE11 1 697 IPR003701 GO:0004520|GO:0006302|GO:0008296|GO:0030870
Mal4g1024 708 Pfam Mre11 DNA-binding presumed domain 299 451 IPR007281 GO:0004519|GO:0005634|GO:0006302|GO:0030145
Mal4g1024 708 MobiDBLite consensus disorder prediction 541 570 - -
Mal4g1024 708 MobiDBLite consensus disorder prediction 622 636 - -
Mal4g1024 708 SMART Mre11_DNA_bind_2 298 451 IPR007281 GO:0004519|GO:0005634|GO:0006302|GO:0030145
Mal4g1024 708 Pfam Calcineurin-like phosphoesterase 9 253 IPR004843 GO:0016787
Mal4g1024 708 MobiDBLite consensus disorder prediction 508 522 - -
Mal4g1024 708 TIGRFAM mre11: DNA repair protein (mre11) 6 400 IPR003701 GO:0004520|GO:0006302|GO:0008296|GO:0030870
Mal4g1024 708 PANTHER DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11 4 683 - -
Mal4g1024 708 MobiDBLite consensus disorder prediction 501 708 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g1024 K10865 - gmx:100801335 1171.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g1024 4 14186617 14197576 Mal4g1024 4 14186617 14197576 ECH