Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04978 ATGGCGAGAAATGAGACTGGTTCAGAAGGCAAGCTATTCAAATTCCTGAAGCTTCCCTTTCGCCATTTTGCAGCTGCAATTGCTTCTGCTTCCTCCCTTCGTTCCGTTGTCAGATCCTACCTCCCTACTCCACGTCGTCTCAAGCTTGATCCTTCCAATAAGCTCTACTTCCCTTATGAGCTAGGAAAGCAGGTTAAGAGTGCCATCAAGATTAAGAACATTGGCAAATCCAATGTAGCTTTCAAGTTTCAAACAAATGCTCCCAAAAGCTGTTTCATGCGCCTTCCTGGGGCCATTCTTGCTCCTGGCGAGAGTACAATTGCAACTGTGTTCAAGATTATAGAACATACAACAAATAATCAAAGGCCAGGAAAAACCAGATTCAAATTTAAAATCATTAGCTTGAAGGTCAAAGCATCAATTGATTATATCCCTGAGCTGTTTGATGAGCAAAAGGACCAAGTAGTAGTGGAGAAGATTTTGCAGGTTGTTTTTCTGGATCCAAAGCATCCTAGCCTTGCTTTGGAAAAACTAAAGCAACAGCTGGATGAGGCTGAGGCTGAGGCTGTTGCACTTAAGGCACGTAATAAGAAACCCTCTAAAGAAGCAGGTCCTAAGGTTATTGGTGAAAGGCCTGCCATAGATGAATGGAAAGAGAGGAGAGAAAGATACCTAGCAAAGCAGCAGGGTAAAGCGGCAGTGGAATCTGTACATGGTGCTGGTCTTGAATAG 732 0.4358 MARNETGSEGKLFKFLKLPFRHFAAAIASASSLRSVVRSYLPTPRRLKLDPSNKLYFPYELGKQVKSAIKIKNIGKSNVAFKFQTNAPKSCFMRLPGAILAPGESTIATVFKIIEHTTNNQRPGKTRFKFKIISLKVKASIDYIPELFDEQKDQVVVEKILQVVFLDPKHPSLALEKLKQQLDEAEAEAVALKARNKKPSKEAGPKVIGERPAIDEWKERRERYLAKQQGKAAVESVHGAGLE. 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04978 243 Gene3D Immunoglobulins 43 170 IPR013783 -
Seca6g04978 243 Pfam MSP (Major sperm protein) domain 47 154 IPR000535 -
Seca6g04978 243 SUPERFAMILY PapD-like 37 176 IPR008962 -
Seca6g04978 243 ProSiteProfiles Major sperm protein (MSP) domain profile. 46 166 IPR000535 -
Seca6g04978 243 MobiDBLite consensus disorder prediction 193 212 - -
Seca6g04978 243 Coils Coil 175 195 - -
Seca6g04978 243 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 45 229 IPR016763 GO:0005789
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04978 Seca-Chr6 117169654 117172687 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04978 - - gmx:100801956 295.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04978 6 117169654 117172687 Seca6g04978 6 117169654 117172687 ECH