Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0298 ATGGCTGAAACAGACCAAGACGGTGAAGCAAACACGCTTCGAGTACTAGTAGCCACGGACTGCCACCTCGGCTACATGGAGAAAGACGAGGTACGCCGTCACGATTCATTTCAAGCGTTCGATGAGATTTGTTCCATCGCCGTTGACAAACACGTTGACTTCATGCTCCTCGCCGGTGATCTATTCCATGAGAATAAGCCTTCAAGGTCAACGTTAGTCAAGGTTATCGAGATTCTCCGTCGTCATTGCCTTAACGATCGTCCTGTTCCGTTTCAAGTTGTTAGCGACCAAACCGTTAATTTTCAGAATATATTTGGTCATGTAAATTATGAAGATCCTCACTTCAATGTTGGTTTGCCTGTCTTTACCATTCATGGGAATCATGATGATCCGGCAGGCGTGGACAACCTTTCTGCAGTTGATATTCTCTCAGCATGTAATCTAGTCAACTACTTTGGGAAAACAGTTCTTGGGGGTTCTGGTGTTGGTCAAATCACTCTCCACCCTATTCTTATTAAGAAGGGTTCAACGGCTGTAGCTCTATATGGTCTGGGAAACATTAGAGATGAACGGCTTAATAGGATGTTTCAAACACCACATGCTGTGCAGTGGATGCGTCCTGAATCTCAGGAAGGGTGTCAAGTGTCTGATTGGTTCAATATTCTGGCACTCCATCAGAACAGAGTAAAAACAAATCCAAAAAATGCAATAAATGAGCACTTCTTACCACGCTTCCTAGACTTCATTGTGTGGGGGCATGAACATGAATGTTTGGTTGACCCACAGGAAGTTCCAGGGATGGGATTTCACATTTCACAACCAGGGTCATCAGTTGCAACATCGCTTATTGATGGGGAATCAAAGCCAAAGCATGTACTTCTTCTAGAAATTAAGGGGAATCAGTATCGTCCAACTAAGATACCTTTGATGTCTGTGAGGCCTTTCGAGTATACAGAGATAATACTAAAAGATGAGCCTGATATTGATCCCAATGATCAACATTCAATTCTTGAGCACCTCGACAAAGTGAAGATTATTCAGGTTGGGAAGTTGCTAGAAAAATCTAGTAAGAAAGCTGTCAACAGGGCAGAACTTAAGCTTCCACTAATACGGATCAAGGTAGATTATTCTGGCTTTATGACCATAAATCCTCAAAGATTTGGGCAGAAATATGTGGGAAAGGTTGCAAACCCCCAAGACATTCTTATATTCTCAAAGGTTTCAAAAAGAGCCAAGGGTGAAGGCAAAATTGATGATTCAGAACGTCTCCGTCCAGAAGAATTAAACCAACAAAACATAGAGGCTTTGGTTGCTGAAAGTAATCTGAAAATGGAGATACTTCCAGTCAATGATTTGGATATTGCATTACACAATTTTGTGAACAAGGATGACAAAATGGCATTTTACTCTTGTATACAATACAATATTGACGAAACTCGAAACAAAATTGCTAAGGATTCGGACACCATGAAGCTTGATGAGGAAGATTTAATTGTTAAAGTTGGAGAAGTCTTGGAGGAACGTGTCAAAGAAAGATCCACTCGTTCTAAGGAACCCACACAGTTCACTGCTAGTGCTCAGTCATTGGAGGACTTCCAGGGCGGAAGTGCTGCTAGAACTGAAAGTGCAGTTTCCTTCAGTGATGATGAAGATGCCATGCCAATCTCTGCCTCAAAGCCAACGAGAGGTCGTAAAGGGTTGTCTGGTGCATCTCAGACTCAAGGAAGAGGAAGAGGGAGGGGCAGGGGCAGAGGCAAAGATTCCAGCAGCTTGAAGCAGACAACTCTTGATGGGGCATTTCACAGTTCTCAGAGGTCTGCATCCGTTGCTGCAGCAACTGCAATCAGAAGTGGTGCTGATGTTGAGGATAATTTGGGTGCTGCCTCAGATGATGATGTTGATGACAATTCGGAAAATGAATCCAAGCTACCAGGACGGAAAAGAGCTGCTTCAAAGGGAAGAGGTCGAGGATCTACACATGCTTCCAAACGTGGGAGGAAATCAGAGAACTCTTCAATCCATAGAATGCTCATGAACAATGATGATGATGACGACGACGATGATGATAATGTCAGGAAGAGATTAAATAAGCCTCAACCTCGGCGAAGAACCTTACCCGGGCTAGACATGCCGCGAATCCTCTTGAAAGAGAGGGGTGCCTTCGGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCTACTGCCGGTGATAAGCCGGAGGAAGGTGAGGATGACGTCAAGTCATCATGCCCCTTATGCCCTGGGTGA 2277 0.4436 MAETDQDGEANTLRVLVATDCHLGYMEKDEVRRHDSFQAFDEICSIAVDKHVDFMLLAGDLFHENKPSRSTLVKVIEILRRHCLNDRPVPFQVVSDQTVNFQNIFGHVNYEDPHFNVGLPVFTIHGNHDDPAGVDNLSAVDILSACNLVNYFGKTVLGGSGVGQITLHPILIKKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPESQEGCQVSDWFNILALHQNRVKTNPKNAINEHFLPRFLDFIVWGHEHECLVDPQEVPGMGFHISQPGSSVATSLIDGESKPKHVLLLEIKGNQYRPTKIPLMSVRPFEYTEIILKDEPDIDPNDQHSILEHLDKVKIIQVGKLLEKSSKKAVNRAELKLPLIRIKVDYSGFMTINPQRFGQKYVGKVANPQDILIFSKVSKRAKGEGKIDDSERLRPEELNQQNIEALVAESNLKMEILPVNDLDIALHNFVNKDDKMAFYSCIQYNIDETRNKIAKDSDTMKLDEEDLIVKVGEVLEERVKERSTRSKEPTQFTASAQSLEDFQGGSAARTESAVSFSDDEDAMPISASKPTRGRKGLSGASQTQGRGRGRGRGRGKDSSSLKQTTLDGAFHSSQRSASVAAATAIRSGADVEDNLGAASDDDVDDNSENESKLPGRKRAASKGRGRGSTHASKRGRKSENSSIHRMLMNNDDDDDDDDDNVRKRLNKPQPRRRTLPGLDMPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPG 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0298 758 PANTHER DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11 9 685 - -
Lal20g0298 758 MobiDBLite consensus disorder prediction 662 680 - -
Lal20g0298 758 TIGRFAM mre11: DNA repair protein (mre11) 11 406 IPR003701 GO:0004520|GO:0006302|GO:0008296|GO:0030870
Lal20g0298 758 PIRSF DSB_repair_MRE11 1 700 IPR003701 GO:0004520|GO:0006302|GO:0008296|GO:0030870
Lal20g0298 758 Pfam Calcineurin-like phosphoesterase 13 257 IPR004843 GO:0016787
Lal20g0298 758 Gene3D Mre11, capping domain 314 416 IPR038487 -
Lal20g0298 758 SMART Mre11_DNA_bind_2 302 459 IPR007281 GO:0004519|GO:0005634|GO:0006302|GO:0030145
Lal20g0298 758 MobiDBLite consensus disorder prediction 508 605 - -
Lal20g0298 758 CDD MPP_Mre11_N 14 282 IPR041796 -
Lal20g0298 758 Pfam Mre11 DNA-binding presumed domain 303 459 IPR007281 GO:0004519|GO:0005634|GO:0006302|GO:0030145
Lal20g0298 758 MobiDBLite consensus disorder prediction 518 543 - -
Lal20g0298 758 MobiDBLite consensus disorder prediction 617 758 - -
Lal20g0298 758 Gene3D - 8 313 IPR029052 -
Lal20g0298 758 SUPERFAMILY Metallo-dependent phosphatases 13 334 IPR029052 -
Lal20g0298 758 MobiDBLite consensus disorder prediction 588 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0298 Lal-Chr20 2279744 2289842 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0298 K10865 - gmx:100801335 1174.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0298 20 2279744 2289842 Lal20g0298 20 2279744 2289842 ECH