Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00802 ATGGGAGAGACTAGTAATACACTTCGTATACTTGTAGCAACAGATTGCCATCTCGGCTACATGGAGAAGGACGAAATACGACGCCATGACTCTTTTCAAGCATTTGATGAGATATGCTCAATCGCCGAGCAGAAGGAGGTTGATTTCTTACTGCTTGGTGGTGATCTATTCCATGAGAATAAGCCGTCGAGATCCACGTTAGTCAAGGCTATTGAAATTCTTCGTCGACATTGTCTCAATGATCTACCGGTGCAGTTCCAAGTTGTCAGCGACCAGACCGTTAATTTTCAGAATGCATTTGGTCATGTAAATTATGAAGATCCTCACTTCAATGTTGGTTTGCCAGTCTTCAGCATTCATGGAAACCATGATGATCCAGCTGGCGTGGACAACCTTTCTGCAGTCGATATTCTCTCAGCATGTAATCTAGTCAACTACTTTGGGAAAACAGTTCTTGGGGGTTCTGGTGTAGGTCAGATCACTATCAACCCTATTCTTATCAAGAAGGGTTCAACAGCTGTTGCTCTGTACGGTCTGGGGAACATTAGAGATGAAAGGCTTAATAGGATGTTTCAAACGCCGCATGCTGTGCAGTGGATGCGGCCTGAATCTCAGGAAGGGTGCCAAGTGTCTGATTGGTTCAACATTTTGGTACTTCATCAGAACAGAGTgaaaacaaatccaaaaaatgcaataaatgaGCACTTCTTACCGCGCTTCCTGGACTTCATTGTGTGGGGGCATGAGCATGAgtgcttaattgacccacaGgAGGTTTCAGGGATGGGATTTCACATTTCACAACCAGGGTCTTCAGTTGCTACATCACTGATTGATGGAGAATCAAAGCCAAAGCATGTGCTTCTTCTAGAAATCAAGGGAAATCAATATCGTCCCACTAAAATACCTCTGATGTCTGTGAGGCCTTTTGAGTACACAGAGATTATACTGAAAGATGAACCTGATATTGATCCCAAtgatcaaaattcaattcttgAACACTTGGACAAAGTGGTTGTGAAGATGCTAGAAAAATCTAGTAAAAGGGCTGTCAGTAGAGCAGAACTCAAACTTCCGCTGATACGCATCAAGGTAGATTACTCTGGATTCATGACTATAAACCCTCAAAGATTTGGGCAGAAATATGTCGGGAAGGTGGCAAACCCACAAGACATTCTTATATTCTCAAAGGCTACAAGAAAGACTAAGGCCGAAGGTAAAATTGATGATTCTGAACGTCTTCGTCCTGAAGAATTAAATCAACAAAACATAGAGGCTTTAGTTGCTGAGAATAATTTGAAAATGGAGATACTTCCAGTTAATGATTTGGATATTGCATTACACAACTTCGTAAATAAGGATGACAAGATGGCTTTCTATTCTTGCTTGCAATACAATCTTGAAGAAACCCGAAGCAAAATTTTTAGGGATTCAGAAACCCAGAAGTTTGAAAATGAAGCTATTATTCTTAAACTTGGAGACTGCTTGGAGGAACGTGTGAAGGAAAGATCAAAACGCTCTAAGGATACTTTGCAGTTCAGTGCTGGTGATCAGTCCTTGGAGGATTTTCATGGCAAAAGTGCTGCTGGAACCGGAAGTGCAGTTTCTTTtagtgatgatgaagatgctCTGCAGATATCTAGCTCAAAGCGAAGTATGAGAGGTCGGAAAGGGTCCTCCAGGGCACCTCCTGATGCTGCTGAAGTAAATAAAACTCCAAGAGGAAGGGGCAGGGGTAGGGGGAGGGGCAGGGGTAGGGGTGCCAGCACGTTGAAGCAGACAACTCTTGATGCATCTTTAGGGTTTCGCCATTCTCAAagGTCTGCATCTGCTGCTGCAACAACTGCCATCCAAAGTGTTGCTGATGATGGAGTTAATTTGGATCCTGCTTCAAGTGAAGACGCTGAAGAATACGCAATTGAAGAGATTGAAGATAGTTCGgaaaatgaattaaaatcgGGGCGGAAAAGGCCTGCTACAaagggaagaggaagaggatcTGCACAACCCTCTAAACGAGGAAAAAAGTCAGATAAATCTTCAATCCATAGAATCCTCATGAACAAAGATGACGACGATGACGACGATGACAATATCAGAAAGAGATTCAATACATCTCAACCTCGGGTGGCAAAAAGCTATGGAGCTTTAAGAAGGTG 2159 0.4067 MGETSNTLRILVATDCHLGYMEKDEIRRHDSFQAFDEICSIAEQKEVDFLLLGGDLFHENKPSRSTLVKAIEILRRHCLNDLPVQFQVVSDQTVNFQNAFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKTVLGGSGVGQITINPILIKKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPESQEGCQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFLDFIVWGHEHECLIDPQEVSGMGFHISQPGSSVATSLIDGESKPKHVLLLEIKGNQYRPTKIPLMSVRPFEYTEIILKDEPDIDPNDQNSILEHLDKVVVKMLEKSSKRAVSRAELKLPLIRIKVDYSGFMTINPQRFGQKYVGKVANPQDILIFSKATRKTKAEGKIDDSERLRPEELNQQNIEALVAENNLKMEILPVNDLDIALHNFVNKDDKMAFYSCLQYNLEETRSKIFRDSETQKFENEAIILKLGDCLEERVKERSKRSKDTLQFSAGDQSLEDFHGKSAAGTGSAVSFSDDEDALQISSSKRSMRGRKGSSRAPPDAAEVNKTPRGRGRGRGRGRGRGASTLKQTTLDASLGFRHSQRSASAAATTAIQSVADDGVNLDPASSEDAEEYAIEEIEDSSENELKSGRKRPATKGRGRGSAQPSKRGKKSDKSSIHRILMNKDDDDDDDDNIRKRFNTSQPRVAKSYGALRR 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00802 719 Gene3D - 3 308 IPR029052 -
Bva09g00802 719 SUPERFAMILY Metallo-dependent phosphatases 8 370 IPR029052 -
Bva09g00802 719 Gene3D Mre11, capping domain 309 407 IPR038487 -
Bva09g00802 719 Pfam Mre11 DNA-binding presumed domain 298 450 IPR007281 GO:0004519|GO:0005634|GO:0006302|GO:0030145
Bva09g00802 719 TIGRFAM mre11: DNA repair protein (mre11) 6 398 IPR003701 GO:0004520|GO:0006302|GO:0008296|GO:0030870
Bva09g00802 719 CDD MPP_Mre11_N 9 277 IPR041796 -
Bva09g00802 719 MobiDBLite consensus disorder prediction 522 541 - -
Bva09g00802 719 Pfam Calcineurin-like phosphoesterase 8 252 IPR004843 GO:0016787
Bva09g00802 719 SMART Mre11_DNA_bind_2 297 450 IPR007281 GO:0004519|GO:0005634|GO:0006302|GO:0030145
Bva09g00802 719 MobiDBLite consensus disorder prediction 671 703 - -
Bva09g00802 719 MobiDBLite consensus disorder prediction 620 719 - -
Bva09g00802 719 PANTHER DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11 2 694 - -
Bva09g00802 719 MobiDBLite consensus disorder prediction 546 603 - -
Bva09g00802 719 MobiDBLite consensus disorder prediction 588 603 - -
Bva09g00802 719 PIRSF DSB_repair_MRE11 1 708 IPR003701 GO:0004520|GO:0006302|GO:0008296|GO:0030870
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00802 Bva-Chr9 4118389 4125778 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00802 K10865 - qsu:111984229 1159.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00802 09 4118389 4125778 Bva09g00802 09 4118389 4125778 ECH