Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01044 ATGGCCATCGCCGCCCGCCAGAAACCTAACTCCGACGCGCGCCTCTTCACGCTCTGTCCCTTCTGGAGCTCCAACCACTCCGTTCAGAGGTCCTCCAAAACGGTGTCGTCCGTCGCGAGGTCGCTGCTCCCTCCGCGCCGGAAGCTCCGTCTCGATCCTTCCAATTACCTCTACTTTCCATATGAACCGGGGAAGCAGGTGCGGAGCGCGGTTCGGTTGAAGAACACTAGCAAGTCTCACGTTGCTTTCAAGTTTCAAACGACGGCGCCAAAGAGTTGTTACATGCGGCCTCCGGGTGGGATTCTTGCTCCTGGGGAAAGTTTGATTGCCACGGTGTTTAAGTTCGTGGAGCAACCTGAAAACAATGAAAAAATGTCGGATCAGAAGAACAAGGTCAAGTTCAAAATCATGAGTCTCAAGGTGAAGGAAGGAGTGGACTATGTACCTGAGCTGTTTGAAGAACAAAAGGATCTAGTGACAGTGGAACGAATATGGAGGGTTGTGTTTATAGATCCAGAACGGCAGAGTCCTGCTTTGGAAAAACTGAAAAGACAGTTGGCTGAAGCTGATGCCGCAGTTGAAGCTCGGAAGAAGCCTCCTGCGGAGGCAGGTCATCGAGTTGTGGCCGAAGGTCGAGTTGTTGCTGAAGGCCTTGTAATCGATGAATGGGTAAGCATAATGTCGAGAATGAATTGTCCATTTCAACGTTTTTAA 714 0.5084 MAIAARQKPNSDARLFTLCPFWSSNHSVQRSSKTVSSVARSLLPPRRKLRLDPSNYLYFPYEPGKQVRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVEQPENNEKMSDQKNKVKFKIMSLKVKEGVDYVPELFEEQKDLVTVERIWRVVFIDPERQSPALEKLKRQLAEADAAVEARKKPPAEAGHRVVAEGRVVAEGLVIDEWVSIMSRMNCPFQRF 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01044 237 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 25 224 IPR016763 GO:0005789
Cca10g01044 237 PANTHER VESICLE-ASSOCIATED PROTEIN 4-1 25 224 - -
Cca10g01044 237 ProSiteProfiles Major sperm protein (MSP) domain profile. 48 170 IPR000535 -
Cca10g01044 237 Gene3D Immunoglobulins 45 174 IPR013783 -
Cca10g01044 237 SUPERFAMILY PapD-like 37 180 IPR008962 -
Cca10g01044 237 Pfam MSP (Major sperm protein) domain 49 156 IPR000535 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01044 Cca-Chr10 12806577 12810277 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01044 - - gmx:100792909 380.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01044 10 12806577 12810277 Cca10g01044 10 12806577 12810277 ECH