Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01048 ATGGAGGACGCCGACGCCGCGAACACGCTCCGCGTTCTGGTGGCCACCGACTGCCACCTCGGGTACATGGAGAAGGACGAGGTGCGCCGCCACGACTCGTTCCACGCCTTCGAGGAGATTTGCGCCATCGCCGAGCGCCAACGCGTGGACTTCGTGCTCCTCGGCGGCGACCTCTTCCACGAGAACAAGCCCTCGCGGTCAACGCTGGTCAAGGCCATCGAGATTCTCCGTCGCTACTGCCTCAACGACCGCCCCGTCCCCTTCCAAGTCGTCAGCGACCAGACGCTTAATTTCCAGAACACGTTTGGTCACGTGAACTACGAGGATCCTCACTTCAATGTTGGTTTGCCTGTGTTTACCATTCATGGAAATCATGACGATCCTGCTGGCGTGGACAACCTTTCTGTAGTTGATATTCTCTCGGCATGTAATCTAGTCAACTACTTTGGGAAAACAGTTCTTGGGGGTTCTGGTGTTGGTCAGATCACTCTCCACCCTATTCTTATCAAGAAGGGTTCAACAGCTGTAGCTCTGTATGGTCTGGGAAACATTAGAGATGAAAGGCTTAATAGGATGTTTCAAACGCCACATGCTGTGCAATGGATGCGACCTGAATCTCAGGAAGGGTGTCAAGTGTCAGATTGGTTCAACATTCTTGTACTTCATCAGAACAGGGTAAAAACAAATCCGAAAAATGCAATAAATGAGCACTTCTTGCCACGCTTCCTAGACTTCATTGTGTGGGGCCATGAGCATGAATGTTTGGTTGACCCACAGGAAGTTCCAGGGATGGGATTTCACATTTCGCAACCAGGCTCATCAGTTGCAACATCACTTATTGATGGGGAATCAAAGCCGAAGCATGTACTTCTTCTAGAAATTAAGGGAAATCAATATCGCCCAACTAAGATACCTTTGGTGTCTGTGCGGCCTTTTGAGTATACTGAGGTAATACTAAAAGACGAGCCAGATATTGATCCTAATGATCAAAGTTCTATACTTGAACACCTAGACAAAGTGGTTGGGAAACTGATAGAAAAGTCTAGCAAGAAGGCTGTCAATAGAAAAGAACTCAAGCTCCCACTAATACGTGTAAAGGTAGATTACTCTGGATTTATGACTATAAATCCTCAAAGATTTGGGCAGAAATATGTTGGGAAGGTTGCAAACCCTCAAGACATTCTCATTTTCTCAAAGGCTACAAAAAGGGCCAAGGTTGAAGGAAAAATTGATGATTCAGAACGGCTTCGTCCAGAAGAATTAAATCAACAGAACATAGAGGCTTTGGTTGCTGAAAATAATCTGAAAATGGAGATATTGCCAGTTAATGATTTGGATATTGCATTGCAAAATTTTGTGAACAAGGATGAAAAAATGGCATTTTACTCTTGTGTACAATACAATATTGAGGAAACACGAAATAAAATTGCTAAGGATTCAGATATTGTTAAGTTTGATGTGGAAGATTTAATTGTCAAAGTTGGAGAATGCTTGGAGGATCGTGTCAAGGAACGTTCTGTACGCTCTAAGGAACCCACACAACTTACTGCTGGTGCTCAACCATGGAAGGATTTTCAAGGCAGAAGCACTGCTGGAACTCAAAATGCAGTTACCTTTAGTGATGATGAAGATGCCATGCCAGTATCTAGCTCAAAGCCAAGTACTAGAGGTCGGAAAGGATCCTCTGGTGCGTCTCAAACTACAACCAGAGGAAGGGGTAGGGGAAGAGGCAGGGGTTCCAGCACCATGAAGCAGACAACACTTGATGGAGCTTTAGGGTTTCGCCCTTCTCAAAGGTCTGCATCAGTTACTGTAGCAACTGCCATCCGAAGTGGTGCTGATGAGGATAATCCGGCTTCTGCTTTAAGTGATGATGCCAATAAAAATGCTGTTGAAGAGATCGATGATAGTTCGGAAAATGAATCCAATCAACCAGGACGGAAGAGGGCTGCTACAAAGGGAAGAGGTAGAGGATCTACAAAGTCTTCTAAACGTGGAAGGAAATCAGATAACTCTTCAatccatagaatgctcatgaacaatgatgatgacgatgatgacgatgatgatgacattagaaagagattaaataagtctcaACCTCGGGTTACTAAAAGCTATGGAGCTCTAAGAAGGTGA 2139 0.4357 MEDADAANTLRVLVATDCHLGYMEKDEVRRHDSFHAFEEICAIAERQRVDFVLLGGDLFHENKPSRSTLVKAIEILRRYCLNDRPVPFQVVSDQTLNFQNTFGHVNYEDPHFNVGLPVFTIHGNHDDPAGVDNLSVVDILSACNLVNYFGKTVLGGSGVGQITLHPILIKKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPESQEGCQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFLDFIVWGHEHECLVDPQEVPGMGFHISQPGSSVATSLIDGESKPKHVLLLEIKGNQYRPTKIPLVSVRPFEYTEVILKDEPDIDPNDQSSILEHLDKVVGKLIEKSSKKAVNRKELKLPLIRVKVDYSGFMTINPQRFGQKYVGKVANPQDILIFSKATKRAKVEGKIDDSERLRPEELNQQNIEALVAENNLKMEILPVNDLDIALQNFVNKDEKMAFYSCVQYNIEETRNKIAKDSDIVKFDVEDLIVKVGECLEDRVKERSVRSKEPTQLTAGAQPWKDFQGRSTAGTQNAVTFSDDEDAMPVSSSKPSTRGRKGSSGASQTTTRGRGRGRGRGSSTMKQTTLDGALGFRPSQRSASVTVATAIRSGADEDNPASALSDDANKNAVEEIDDSSENESNQPGRKRAATKGRGRGSTKSSKRGRKSDNSSIHRMLMNNDDDDDDDDDDIRKRLNKSQPRVTKSYGALRR 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01048 712 PIRSF DSB_repair_MRE11 1 701 IPR003701 GO:0004520|GO:0006302|GO:0008296|GO:0030870
Cca10g01048 712 Gene3D Mre11, capping domain 311 409 IPR038487 -
Cca10g01048 712 SMART Mre11_DNA_bind_2 299 452 IPR007281 GO:0004519|GO:0005634|GO:0006302|GO:0030145
Cca10g01048 712 MobiDBLite consensus disorder prediction 663 681 - -
Cca10g01048 712 Gene3D - 5 310 IPR029052 -
Cca10g01048 712 MobiDBLite consensus disorder prediction 526 607 - -
Cca10g01048 712 MobiDBLite consensus disorder prediction 628 648 - -
Cca10g01048 712 PANTHER DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11 5 686 - -
Cca10g01048 712 CDD MPP_Mre11_N 11 279 IPR041796 -
Cca10g01048 712 SUPERFAMILY Metallo-dependent phosphatases 10 345 IPR029052 -
Cca10g01048 712 Pfam Mre11 DNA-binding presumed domain 300 452 IPR007281 GO:0004519|GO:0005634|GO:0006302|GO:0030145
Cca10g01048 712 TIGRFAM mre11: DNA repair protein (mre11) 8 401 IPR003701 GO:0004520|GO:0006302|GO:0008296|GO:0030870
Cca10g01048 712 Pfam Calcineurin-like phosphoesterase 10 254 IPR004843 GO:0016787
Cca10g01048 712 MobiDBLite consensus disorder prediction 502 712 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01048 K10865 - gmx:100801335 1284.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01048 10 12859619 12869370 Cca10g01048 10 12859619 12869370 ECH