Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0347 ATGGCAGCACCATCCATGGAGGATGCTGACGTGGCAAACACACTCCGCATACTGGTAGCCACTGATTGCCACCTCGGTTACATGGAGAAGGACGAAGTGCGTCGCCACGACTCCTTTCACGCGTTCGAAGAGATTTGCTCCGTCGCCGAACGCAGCAACGTCGATTTCATGCTTCTCGGCGGAGACCTCTTCCACGAGAACAAGCCTTCTCGGTCAACCCTAGTCAAAGCCATCGAGATTCTCCGTCGCTATTGCCTAAACGACCGTCCTGTTTCATTTCAAGTCGTCAGTGACCAAACGCTTAATTTTCAGGACGCGTTTGGTCATGTGAATTATGAAGATCCTCACTTCAATGTTGGTTTGCCTGTGTTTACTATTCATGGAAATCATGACGATCCTGCGGGCGTGGACAACCTTTCCGTAGTTGATATTCTCTCAGCATGTAATCTAGTAAACTACTTTGGGAAAACAGTCCTTGGGGGTTCTGGTGTTGGTCAGATTACTCTCCACCCTATTCTTATCAAAAAGGGTTCAACAGCTGTAGCTCTGTATGGTCTGGGAAACATTAGAGATGAAAGGCTTAATAGGATGTTTCAAACACCACATGCTGTGCAATGGATGCGACCTGAATCTCAGGAAGGGTGTCAAGTGTCTGATTGGTTCAATATTCTGGTACTTCATCAGAACAGGGTGAAAACAAATCCAAAAAATGCAATAAATGAGCACTTCCTGCCACGCTTCCTAGACTTTATTGTGTGGGGCCACGAGCATGAATGTTTGGTTGATCCACAGGAAGTTCCAGGGATGGGATTTCACATTTCACAACCAGGGTCATCAGTTGCAACATCACTTATTGATGGAGAATCAAAGCCGAAGCATGTACTTCTTCTAGAAATTAAGGGAAATCAATATCGCCCAACTAAGATACCTTTGACGTCTGTGCGGCCTTTTGAGTACACTGAGGTCATACTAAAAGATGAGCCTGATATTGATCCCAACGATCAAAATTGTATTCTTGAGCACTTAGACAAAGTGGTTGGGAAGCTGCTAGAAAAATCTAGTAAGAAGGCCGTCAATAAAAAAGAACTCAAGCTTCCACTTATACGTGTCAAGGTAGATTACTCTGGATTTATGACTATAAATCCTCAAAGATTTGGGCAGAAATACGTTGGGAAGGTTGCAAACCCCCAAGACATTCTCATTTTCTCTAAAGCTACAAAAAGAGCCAAGGTTGAAGGTAAAATTGATGAGTCAGAACGACTTCGTCCAGAAGAATTAAATCAACAGAACATAGAGGCTTTGGTTGCTGAAAATAATCTGAAAATGGAGATATTGCCAGTCAATGATTTGGATATTGCATTGCACAATTTTGTGAACAAGGATGATAAAATGGCATTTTACTCTTGTGTACAATACAACATTGAGGAAACAAGGAATAAAATTGCTAAGGATTCGGATAATCTGAAGTTTGAAGAGGAAAATTTAATTGTTAAAGTTGGAGAATGCTTGGAGGAACGTGTCAAGGAACGATCTGTACATACCAAGGAACCCACACAGCTCACTGCTGGTACTCAGTCATGGGAGAATTTCCAAGGCAGAAGTGCTGCAGGAACTGGAAGTGCCGTTTCTTTTAGTGATGATGAAGATGCCATGCCAATATCTAGCTCGAAGCCAAGCACTAGAGGTGGAAAAGGGTCTTCTGGTGCATCTCAAACACCAACCAGAGGAAGGGGCAGGGGCAGGGGCAGAGGCAGGGGTTCTAGCAACTTGAAGCAGACAACTCTTGATGGAGCTTTGGGGTTACGCTTTTCTCAGAGGTCTGCATCAGTTGCTGCAGCAACTGCCATCCAAAGTGGTGCGGATGAGGATAATTTGGTTTCTGCTTCAAGTGATGATGCCAATAAAAATGCCGTTGAAGAGATTGATGATAGTTCGGAAAATGAGTCCAAGCTTCCTGGCCGGAAGAGGGCTGCTTCAAAAGGAAGAGGTAGAGGATCTACACAGTCTTCTAAACGTGGAAGGAAATCAGAGAACTCTTCAATCCATAGAATGCTCATGAATAACGATGATGATGACGATGACGATGATGTTAGAAAGAGATTAAATAAGTCTCAACCTCGGGTGGCTAAAAGCTATGGAGCTCTAAGAAAGTGA 2154 0.4373 MAAPSMEDADVANTLRILVATDCHLGYMEKDEVRRHDSFHAFEEICSVAERSNVDFMLLGGDLFHENKPSRSTLVKAIEILRRYCLNDRPVSFQVVSDQTLNFQDAFGHVNYEDPHFNVGLPVFTIHGNHDDPAGVDNLSVVDILSACNLVNYFGKTVLGGSGVGQITLHPILIKKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPESQEGCQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFLDFIVWGHEHECLVDPQEVPGMGFHISQPGSSVATSLIDGESKPKHVLLLEIKGNQYRPTKIPLTSVRPFEYTEVILKDEPDIDPNDQNCILEHLDKVVGKLLEKSSKKAVNKKELKLPLIRVKVDYSGFMTINPQRFGQKYVGKVANPQDILIFSKATKRAKVEGKIDESERLRPEELNQQNIEALVAENNLKMEILPVNDLDIALHNFVNKDDKMAFYSCVQYNIEETRNKIAKDSDNLKFEEENLIVKVGECLEERVKERSVHTKEPTQLTAGTQSWENFQGRSAAGTGSAVSFSDDEDAMPISSSKPSTRGGKGSSGASQTPTRGRGRGRGRGRGSSNLKQTTLDGALGLRFSQRSASVAAATAIQSGADEDNLVSASSDDANKNAVEEIDDSSENESKLPGRKRAASKGRGRGSTQSSKRGRKSENSSIHRMLMNNDDDDDDDDVRKRLNKSQPRVAKSYGALRK* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0347 717 MobiDBLite consensus disorder prediction 509 593 - -
Apr2g0347 717 CDD MPP_Mre11_N 16 284 IPR041796 -
Apr2g0347 717 Gene3D - 10 315 IPR029052 -
Apr2g0347 717 MobiDBLite consensus disorder prediction 675 703 - -
Apr2g0347 717 MobiDBLite consensus disorder prediction 516 541 - -
Apr2g0347 717 PIRSF DSB_repair_MRE11 2 706 IPR003701 GO:0004520|GO:0006302|GO:0008296|GO:0030870
Apr2g0347 717 MobiDBLite consensus disorder prediction 635 655 - -
Apr2g0347 717 Pfam Mre11 DNA-binding presumed domain 305 457 IPR007281 GO:0004519|GO:0005634|GO:0006302|GO:0030145
Apr2g0347 717 MobiDBLite consensus disorder prediction 623 717 - -
Apr2g0347 717 SMART Mre11_DNA_bind_2 304 457 IPR007281 GO:0004519|GO:0005634|GO:0006302|GO:0030145
Apr2g0347 717 Coils Coil 474 494 - -
Apr2g0347 717 Pfam Calcineurin-like phosphoesterase 15 259 IPR004843 GO:0016787
Apr2g0347 717 TIGRFAM mre11: DNA repair protein (mre11) 13 406 IPR003701 GO:0004520|GO:0006302|GO:0008296|GO:0030870
Apr2g0347 717 Gene3D Mre11, capping domain 316 414 IPR038487 -
Apr2g0347 717 SUPERFAMILY Metallo-dependent phosphatases 15 349 IPR029052 -
Apr2g0347 717 MobiDBLite consensus disorder prediction 549 574 - -
Apr2g0347 717 PANTHER DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11 12 693 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0347 K10865 - gmx:100801335 1300.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0347 2 4145061 4153450 Apr2g0347 2 4145061 4153450 ECH