Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04485 ATGGAGGACGCCGAAGAAAACACAGTTCGAATCCTAATAGCAACAGATTGCCATTTAGGTTACATGGAAAAAGACGAAGTTCGACGCCACGATTCATTTCAAGCATTCGAAGAAATTTGTTCCATAGCCGAAAAAAAGCATGTCGATTTCATGCTACTTGGTGGTGATCTTTTCCATGAAAATAAACCTTCTAGGTCAACTTTAGTCAAAGCTATTGAGATTCTCCGTCGTTATTGCCTCAATGATCGTCCTGTTCCTTTTCAAGTTGTTAGCGACCAAACTCTTAATTTTCAGAATACgTTTGGTCATGTAAATTATGAAGATCCTCATTTCAATGTTGGTTTGCCTGTATTTACTATTCATGGAAATCATGATGATCCTGCTGGAGTGGACAACCTTTCTGTAGTTGATATTCTCTCAGCATGTAATCTAGTCAACTACTTTGGGAAAACAGTCCTCGGGGGTTCTGGTGTTGGTCAGATCACTATCAACCCTATTCTTATAAAGAAGGGTTCAACAGCTGTAGCTCTATATGGTTTGGGGAACATTAGAGATGAAAGACTTAATAGGATGTTTCAAACGCCACATGCTGTGCAGTGGATGCGACCTGAATCTCAGGAAGGGTGTGAAGTTTCTGATTGGTTCAACATGCTGGTACTTCATCAGAACAGAGTGAAAACAAATCCCAAAAATGCAATAAATGAGCACTTCCTGCCACGATTTCTAGACTTCATTGTGTGGGGGCATGAGCATGAATGTTTGATTGACCCTCAGgaagttCCAGGGATGGGATTTCATATTTCACAACCAGGGTCATCGGTTGCAACATCACTTATTGATGGAGAATCGAAGCCAAAACATGTACTTCTTTTAGAAATTAAGGGAAATCAGTATCGCCCTACTAAGATACCTTTAACATCTGTGCGGCCTTTTGAGTATACAGAGATAGTACTGAAAGATATGCCTGGTATTGATTCCAATGATCAGAATTCTATTCTTGAACATCTCGACAAAGTGGTCGAGAAGCTTCTAGAAAAATCTAGTAACAAGGTTGTGCCACGAGCAGAACTTAAGCTTCCACTAGTACGTATCAAGGTAGATTACTCTGGATTTATGACTATTAATCCTCAAAGATTTGGGCAGAAATATGTAGGAAAGGTTGCAAACCCGCAAGACATTCTTATATTTTCAAAGGCGTCAAAATTGGAGAAGGGTGTAGGCAAAATTGAAGATTCAGAACGACTTCGTCCAGAAGAATTAAATCAACAGAACATAGAGGCTTTGGTTGCTGAAAATAATCTGAAAATGGAGATACTTCCAGTCAATGATTTGGATATTGCTTTAcacaattttgtgaacaaggaTGATAAAATGGCATTTTACTCTTGCGTACAGTACAATATTGATGAAACACGGAATAAAATTGCTAAGGATTCAAATGAGCGGAAGTTTGATGAGGAAGATTTAGTTGTTAAAGTTGGAGAGTGCTTTGAGGAACGTGTTAAGGAACGATCCACACGCCCCAAAGGATCTACACAGTTCACACCTGGTGCTCAGTCTTTTGAGGATTTTCAAGGCAGAAGTGCTGCTGGAGCTGATAGTGCAGTTTCCTtcagtgatgatgaagatgcCATGCCAATGTCGAGCTCAAAACCAAGCACCAGAGGTCGGAAAGGATCCTCTGCATCTCAAACTACAACCAGAGGAAGGGGCAGAGGCAGGGGTAGGGGAAGAGGCAAGGATTCCACCACCTTGAAGCAGACAACCCTTGATGGAGCTTTAGGGTTTCGCTCTTCTCAAAGGTCTGCATCAGTTGCTGCAGCAACTTCCATCCAAAGTGGTGCGGATGATTATGCTTCAAGTGACGATGCCAAAGGAAATGCAGTCGAAGAGATTGATGACAGTTCGGACGATGAATCCAATCTACTGGCACGGAAAAGGGCTGCTCCAAAGGGAAGAGGTAGAGGTACTACACAGTCTTCTAAACGGGGGAGGAAATCAGATAACTCTTCAATCCATAGAATGCTCATGAACAATGATGACGACGACGATGACGACGATGATGACAATCTTCGAAAGAAATTAAATCCGTCTCAACCTCGGgCGCCCAGAAACTATGGAGCTCTAAGAAGATGA 2136 0.4082 MEDAEENTVRILIATDCHLGYMEKDEVRRHDSFQAFEEICSIAEKKHVDFMLLGGDLFHENKPSRSTLVKAIEILRRYCLNDRPVPFQVVSDQTLNFQNTFGHVNYEDPHFNVGLPVFTIHGNHDDPAGVDNLSVVDILSACNLVNYFGKTVLGGSGVGQITINPILIKKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPESQEGCEVSDWFNMLVLHQNRVKTNPKNAINEHFLPRFLDFIVWGHEHECLIDPQEVPGMGFHISQPGSSVATSLIDGESKPKHVLLLEIKGNQYRPTKIPLTSVRPFEYTEIVLKDMPGIDSNDQNSILEHLDKVVEKLLEKSSNKVVPRAELKLPLVRIKVDYSGFMTINPQRFGQKYVGKVANPQDILIFSKASKLEKGVGKIEDSERLRPEELNQQNIEALVAENNLKMEILPVNDLDIALHNFVNKDDKMAFYSCVQYNIDETRNKIAKDSNERKFDEEDLVVKVGECFEERVKERSTRPKGSTQFTPGAQSFEDFQGRSAAGADSAVSFSDDEDAMPMSSSKPSTRGRKGSSASQTTTRGRGRGRGRGRGKDSTTLKQTTLDGALGFRSSQRSASVAAATSIQSGADDYASSDDAKGNAVEEIDDSSDDESNLLARKRAAPKGRGRGTTQSSKRGRKSDNSSIHRMLMNNDDDDDDDDDDNLRKKLNPSQPRAPRNYGALRR 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04485 711 PANTHER DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11 4 684 - -
Tsu02g04485 711 MobiDBLite consensus disorder prediction 582 617 - -
Tsu02g04485 711 Gene3D - 4 309 IPR029052 -
Tsu02g04485 711 SMART Mre11_DNA_bind_2 298 451 IPR007281 GO:0004519|GO:0005634|GO:0006302|GO:0030145
Tsu02g04485 711 MobiDBLite consensus disorder prediction 543 570 - -
Tsu02g04485 711 SUPERFAMILY Metallo-dependent phosphatases 10 345 IPR029052 -
Tsu02g04485 711 PIRSF DSB_repair_MRE11 1 697 IPR003701 GO:0004520|GO:0006302|GO:0008296|GO:0030870
Tsu02g04485 711 Pfam Mre11 DNA-binding presumed domain 299 451 IPR007281 GO:0004519|GO:0005634|GO:0006302|GO:0030145
Tsu02g04485 711 TIGRFAM mre11: DNA repair protein (mre11) 6 400 IPR003701 GO:0004520|GO:0006302|GO:0008296|GO:0030870
Tsu02g04485 711 CDD MPP_Mre11_N 10 278 IPR041796 -
Tsu02g04485 711 Gene3D Mre11, capping domain 310 406 IPR038487 -
Tsu02g04485 711 MobiDBLite consensus disorder prediction 500 711 - -
Tsu02g04485 711 MobiDBLite consensus disorder prediction 508 522 - -
Tsu02g04485 711 Pfam Calcineurin-like phosphoesterase 10 253 IPR004843 GO:0016787
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04485 K10865 - gmx:100801335 1176.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04485 02 53728886 53739074 Tsu02g04485 02 53728886 53739074 ECH