Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4485 ATGGCGGAAGCCGAAGCCACGGACACGCTTCGCATACTGGTAGCCACCGACTGCCATCTCGGGTACATGGAGAAAGACGAGGTGCGCCGCCACGACTCATTCCAAGCATTCGAAGAGATTTGCTCCATCGCGGAGGAGAAGCAGGTCGACTTCATGCTACTCGGCGGTGACCTCTTCCACGAGAACAAGCCAACTAGGTCAACGTTAGTCAAGGCCATTGAGATTCTCCGTCGCTATTGCCTCAATGATCGACCCGTTCCCTTCCAAGTTGTTAGTGACCAGACCCTTAATTTCCAGAACACGTTTGGTCATGTGAATTATGAAGATCCTCACTTTAATGTTGGCTTGCCGGTTTTTACCATTCATGGAAATCATGACGATCCCGCAGGCGTGGACAACCTTTCTGTTGTTGATATTCTCTCGGCATGTAATCTTGTCAACTACTTTGGGAAAACAGTTCTTGGGGGTTCTGGTGTTGGTCAGATCACTCTACACCCTATTCTTATCAAGAAGGGTTCAACAGCTGTAGCTCTGTATGGTCTGGGGAACATTAGAGATGAACGGCTTAATAGGATGTTTCAAACACCACATGCTGTGCAGTGGATGCGTCCTGAATCTCAGGAAGGGTGTCAAGTTTCTGATTGGTTCAACATTCTGGTACTTCATCAGAACAGAGTGAAAATGAATCCAAAAAATGCAATAAATGAGCACTTCCTGCCACGCTTCCTGGACTTCATTGTGTGGGGACATGAGCATGAATGTTTGGTTGACCCACAGGAAGTTTCTGGGATGGGATTTCACATTTCGCAACCAGGGTCATCAGTTGCAACATCACTAATTGATGGAGAATCGAAGCCAAAGCATGTACTTCTTTTAGAAATTAAGGGAAATCAATATCGCCCAACTAAGATACCTTTAAAATCTGTGCGGCCTTTTGAGTATACAGAGATTATATTAAAAGATGAGCCTGATATTGATCCCAATGATCAACATTCTATTCTTGAACATCTGGACAAAGTGGTCGGGAAGCTTATAGAAAAATCTAGTAAGCAGGCTGTCCATAGAGCAGAACTCAAGCTTCCACTAATTCGTATCAAGGTCGACTACTCTGGATTTATGACTATAAATCCTCAAAGATTTGGGCAGAAATATGTAGGGAAGGTTGCAAACCCCCAAGACATTCTTATATTCTCGAAGTCTGCAAAAAAGGCCAAGAATGAAGGTAAAATTGATGATTCTGAACGTCTTCGTCCAGAAGAATTAAATCAACAGAACATTGAGGCTTTAGTTGCTGAAAATAATCTGAAAATGGAGATACTTCCTGTCAATGATTTGGATATTGCATTGCACAATTTTGTGAACAAGGATGATAAAATGGCATTTTACACTTGTGTACAAAACAATATTGTTGAAACAAGAAATAAAATTGCTAAGGATTCAGATAACCTGCAGTTTGACAATGAAGATTTAGTCGTTAAAGTTGGAGAGTGCTTGGAGGAACGGGTCAAGGAACGATCTGTACTCTCCAAGGAACCCACACAGTTCACCGCTGGTGCTCAGTCATTGGAGGATTTCCGAGCTGCTGGAGCTGGAAGTGCGGTTTCCTTCAGTGATGATGAAGATGCCATGCCAATGTCTAGCTCTAAGCCAAGCACAAGAGGCCGGAGAGGGTCCTCTAGTACATCTCAAACTCAAACCAGAGGAAGGGGCCGGGGCAGGGGCAGAGGCAAGGATTCCAGCACCTTGAAGCAGACGACCCTTGATGGAGCTTTAGGCTTTCGCTCTTCACAGAGATCTGCATCGGTTGCTGCATCAACTGCCATTCGAAGTGTTGCTGATGGTGGGGATAACTTGGCATCTGCTTCAAGTGATGATGCCATTCAAAATGCGGTCGAAGGTGTTGATGACAGTTCGGAAAATGAATCTAAGCTGCCAGGACGCAAGAGGGCTGCTCCAAAGGGAAGAGGCAGAGGATCTAACCAGCCTTCTAATTCTAAACGTGGAAGGAAATCAGAAAACTCTTCAGTCCATAGAATGCTGATGAACAATGATGATGATGATGACGACGATGATGACAATGTCAGAAAGAGATTAAATAAGTCTCAACCTCGGGTGACCAAAAACTATGGAGCTCTAAGAAGGTGA 2145 0.4443 MAEAEATDTLRILVATDCHLGYMEKDEVRRHDSFQAFEEICSIAEEKQVDFMLLGGDLFHENKPTRSTLVKAIEILRRYCLNDRPVPFQVVSDQTLNFQNTFGHVNYEDPHFNVGLPVFTIHGNHDDPAGVDNLSVVDILSACNLVNYFGKTVLGGSGVGQITLHPILIKKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPESQEGCQVSDWFNILVLHQNRVKMNPKNAINEHFLPRFLDFIVWGHEHECLVDPQEVSGMGFHISQPGSSVATSLIDGESKPKHVLLLEIKGNQYRPTKIPLKSVRPFEYTEIILKDEPDIDPNDQHSILEHLDKVVGKLIEKSSKQAVHRAELKLPLIRIKVDYSGFMTINPQRFGQKYVGKVANPQDILIFSKSAKKAKNEGKIDDSERLRPEELNQQNIEALVAENNLKMEILPVNDLDIALHNFVNKDDKMAFYTCVQNNIVETRNKIAKDSDNLQFDNEDLVVKVGECLEERVKERSVLSKEPTQFTAGAQSLEDFRAAGAGSAVSFSDDEDAMPMSSSKPSTRGRRGSSSTSQTQTRGRGRGRGRGKDSSTLKQTTLDGALGFRSSQRSASVAASTAIRSVADGGDNLASASSDDAIQNAVEGVDDSSENESKLPGRKRAAPKGRGRGSNQPSNSKRGRKSENSSVHRMLMNNDDDDDDDDDNVRKRLNKSQPRVTKNYGALRR* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4485 714 Gene3D - 5 310 IPR029052 -
Lja3g4485 714 MobiDBLite consensus disorder prediction 619 714 - -
Lja3g4485 714 SMART Mre11_DNA_bind_2 299 452 IPR007281 GO:0004519|GO:0005634|GO:0006302|GO:0030145
Lja3g4485 714 SUPERFAMILY Metallo-dependent phosphatases 10 345 IPR029052 -
Lja3g4485 714 MobiDBLite consensus disorder prediction 541 569 - -
Lja3g4485 714 TIGRFAM mre11: DNA repair protein (mre11) 8 401 IPR003701 GO:0004520|GO:0006302|GO:0008296|GO:0030870
Lja3g4485 714 Gene3D Mre11, capping domain 311 409 IPR038487 -
Lja3g4485 714 MobiDBLite consensus disorder prediction 579 599 - -
Lja3g4485 714 Pfam Mre11 DNA-binding presumed domain 300 452 IPR007281 GO:0004519|GO:0005634|GO:0006302|GO:0030145
Lja3g4485 714 PANTHER DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11 5 688 - -
Lja3g4485 714 MobiDBLite consensus disorder prediction 533 599 - -
Lja3g4485 714 Pfam Calcineurin-like phosphoesterase 10 254 IPR004843 GO:0016787
Lja3g4485 714 CDD MPP_Mre11_N 11 279 IPR041796 -
Lja3g4485 714 PIRSF DSB_repair_MRE11 1 703 IPR003701 GO:0004520|GO:0006302|GO:0008296|GO:0030870
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4485 K10865 - gmx:100801335 1204.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4485 3 86590413 86599855 Lja3g4485 3 86590413 86599855 ECH