Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0353 ATGGGTGATTCTTCGAGGGAGGATGCCAGCAATACTCTTAGAGTGCTTGTTGCTACGGATTGCCATCTAGGCTATATGGAGAAGGATGAAGTACGTAGGCATGATTCTTTCCAGGCATTTGAGGAAATATGCTCAATAGCAGATCAAAAGCAGGTGGACTTCTTACTCCTTGGTGGTGATCTTTTCCATGAGAATAAGCCCTCAAGGTCAACATTGGTTAAGACCATTGAGATCCTCCGTCGTTATACCCTCAATGATCGTCCGGTGCAGTTTGAAGTTGTCAGTGATCAGACTGTGAACTTCGCAAACATATTTGGTCATGTGAATTATGAAGATCCTCACTTCAATGTCGGCTTGCCAGTTTTTAGTATTCATGGAAATCATGATGATCCTGCTGGAGTGGACAACCTTTCTGCTGTTGATATTCTTTCGGCATGCAATCTGGTGAACTATTTTGGGAAAATGGTTCTTGGAGGTTCTGGTGTTGGTCAAATCACTCTCTACCCTATTCTTATTAGGAAGGGTTCAACGCTTGTGGCTCTCTATGGTCTTGGGAATATTCGAGATGAACGCCTCAATAGGATGTTTCAGACACCACATGCTGTGCAATGGATGCAGCCCGAAGCTCAAGAAGGGTGTCAAGTGTCAGACTGGTTCAACATTTTGGTACTTCATCAAAACAGAGTAAAGACAAATCCTAAAAATGCAATCAGTGAGCATTTTTTACCAAGGTTCCTAGACTTCATAGTGTGGGGGCATGAACATGAATGTCTTGTTGATCCTCAGGAGGTTGCAGGTATGGGTTTCCACATTACCCAACCAGGCTCTTCCATTGCAACATCACTGATTGATGGAGAGTCAAAGCCGAAGCATGTACTACTTTTAGAAATTAAGGGAAATCAATACCGCCCAACCAAGATCCCATTGAAGTCAGTGAGGCCTTTTGAATACACTGAGATTGTGCTAAAGGATGAAGCTGACATTGATCCAAATGATCAAACTTCAATTCTTGAACATCTAGACAAAGTGGTCAGAAACCTGATTGACAAAGCTAGTGGAAAGTTTGTTAATGGATCAGAGCTCAAGCTTCCACTAGTCCGGATAAAGGTAGATTACTCTGGATTTATGACAATAAATCCTCAAAGGTTTGGGCAAAAGTATGTGGGCAAGGTTGCAAATCCCCAAGATATTCTTATTTTCACAAAGGCTTCAAGAAAAGGTCGTAGTGAAGCCAAAATTGATGACTCTGAGCGGCTTCGCCCAGAAGAATTGAATCAACAAAATATAGAAGCCTTAGTTGCTGAGAATAATCTGAAAATGGAGATCCTTCCAGTCAATGATTTGGATGTTGCATTGCACAATTTTGTCAACAAAGATGACAAAATGGCTTTCTATTCTTGTGTTCAATATAATCTGGAAGAGACACGTAGTAAAATTGCTCGTGATTCAGATCCTTTAAAGTTTGAAGAGGAAGATTTAATTCTTAAAGTTGGAGAGTGCTTGGAGGAACGGGTCAAGGAAAGGTCAGTGCACTCAAAGGAAACCCCACAGTTCATGTCAAGTGCTCGGTCATTGGAGAATATCAGAAGTAAAGGTACTGCTGAAACTGGAAGTGCAGTTTCCTTTAGTGATGATGAAGACCCCACCCAGTTATCTGGGTCAAAATCTGCCACTAGGGGCAGAAAAGGGTCATCAGCAACCTTTAAGTCCTCCCATGATGCTTCTGAACAAGGTAAAGGTAAATCTTCTACAAGAGGAAGGGGCAGGGGCAGGGGCAGGGGGAGGAGCTCCAGTACCTTGAAGCAGATGACACTTGATTCAAGTCTGGGATTCCGCCATTCTGAAAGATCTGCATCAGTTGCTGCGACAGCTGCTGTTCGAAACCTTGCTGATGATGAGGACAATGTGGAGTCCAGTTCAAGCGATGAAGCAGGGAAATATGGAATTAATGAGGTTGATGACAGCTCGGAAAATGATGAGAATCTCCAAGGCAAAGGACGCAAAAGAGCTGCTCCAAGGGGAAGGGGTAGAGGTGCTACTACATCCTCTAAGCGAGGAAGGAAATCAGATTCCACTTCAATTCAGAGAATGCTTATGAACAAAGATGATGATGATGATGATGAGGATGACATGTCAAAGAGATTAAATAAGCCTCAGCCTCGGGTAACAAGGAATTATGGTGCTCTAAGAAGGTAA 2196 0.4281 MGDSSREDASNTLRVLVATDCHLGYMEKDEVRRHDSFQAFEEICSIADQKQVDFLLLGGDLFHENKPSRSTLVKTIEILRRYTLNDRPVQFEVVSDQTVNFANIFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGQITLYPILIRKGSTLVALYGLGNIRDERLNRMFQTPHAVQWMQPEAQEGCQVSDWFNILVLHQNRVKTNPKNAISEHFLPRFLDFIVWGHEHECLVDPQEVAGMGFHITQPGSSIATSLIDGESKPKHVLLLEIKGNQYRPTKIPLKSVRPFEYTEIVLKDEADIDPNDQTSILEHLDKVVRNLIDKASGKFVNGSELKLPLVRIKVDYSGFMTINPQRFGQKYVGKVANPQDILIFTKASRKGRSEAKIDDSERLRPEELNQQNIEALVAENNLKMEILPVNDLDVALHNFVNKDDKMAFYSCVQYNLEETRSKIARDSDPLKFEEEDLILKVGECLEERVKERSVHSKETPQFMSSARSLENIRSKGTAETGSAVSFSDDEDPTQLSGSKSATRGRKGSSATFKSSHDASEQGKGKSSTRGRGRGRGRGRSSSTLKQMTLDSSLGFRHSERSASVAATAAVRNLADDEDNVESSSSDEAGKYGINEVDDSSENDENLQGKGRKRAAPRGRGRGATTSSKRGRKSDSTSIQRMLMNKDDDDDDEDDMSKRLNKPQPRVTRNYGALRR* 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0353 731 Pfam Mre11 DNA-binding presumed domain 303 455 IPR007281 GO:0004519|GO:0005634|GO:0006302|GO:0030145
Vvi19g0353 731 PIRSF DSB_repair_MRE11 1 720 IPR003701 GO:0004520|GO:0006302|GO:0008296|GO:0030870
Vvi19g0353 731 FunFam Double-strand break repair protein 8 313 - -
Vvi19g0353 731 SUPERFAMILY Metallo-dependent phosphatases 13 346 IPR029052 -
Vvi19g0353 731 NCBIfam DNA repair protein (mre11) 11 402 IPR003701 GO:0004520|GO:0006302|GO:0008296|GO:0030870
Vvi19g0353 731 Gene3D - 8 313 IPR029052 -
Vvi19g0353 731 FunFam Double-strand break repair protein 314 412 - -
Vvi19g0353 731 Gene3D Mre11, capping domain 314 412 IPR038487 -
Vvi19g0353 731 SMART Mre11_DNA_bind_2 302 455 IPR007281 GO:0004519|GO:0005634|GO:0006302|GO:0030145
Vvi19g0353 731 MobiDBLite consensus disorder prediction 595 614 - -
Vvi19g0353 731 MobiDBLite consensus disorder prediction 506 615 - -
Vvi19g0353 731 PANTHER DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11 8 712 - -
Vvi19g0353 731 Pfam Calcineurin-like phosphoesterase 13 257 IPR004843 GO:0016787
Vvi19g0353 731 CDD MPP_Mre11_N 14 282 IPR041796 -
Vvi19g0353 731 MobiDBLite consensus disorder prediction 629 731 - -
Vvi19g0353 731 MobiDBLite consensus disorder prediction 514 573 - -
Vvi19g0353 731 MobiDBLite consensus disorder prediction 647 667 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0353 K10865 - vvi:100252167 1372.07