Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu9g1998 . . . Aed10g0994 . Ahy20g2444 Ahy10g1963 . . . . . . . . . . Cca03g00612 . . . . . . . . . . . . . . . . . . . . . . Mepo5g02840 . . Mtr3g0590 . Phco7g02320 . . Pste2g00498 . . . . . . . . . . . Vimu10g00961 . . Vra3g1128
Pvu9g1999 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu9g2000 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g02321 . . . . . . . . . . . . . . . . . .
Pvu9g2001 . . . . . . . . . . . . . . . . . Cca03g00637 . . . . . . . . . . . . . . . . . . . . . . Mepo5g02839 Mesa9g00706 . Mtr3g0589 . Phco7g02322 . . . Pumo10g02219 Rops10g00478 Seca4g03313 . . . . Trre5g01749 . . Vifa2g00563 Vimu10g00958 . . Vra3g1129
Pvu9g2002 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mepo5g02837 Mesa9g00703 . Mtr3g0588 . Phco7g02323 . . Pste2g00507 . . . . . . . Trre5g01748 . . . Vimu10g00957 . . Vra3g1130
Pvu9g2003 Acco13g1030 Accr12g01002 . . . . . . Alju13g1130 . . Apr1g2577 . Bach2g01710 Bisa02g0346 Bva06g00863 . . Dere14g0108 . Enph5g0820 Glsi13g0829 Gma15g01963 . . . . . . . . . . . Lele17g0692 Lele18g0829 Lele19g0861 Lele20g0591 . . Mepo6g02176 Mesa5g02384 Mibi13g0993 Mtr2g1890 . Phco7g02324 Prci9g1142 Psa1g0514 . . . . Spst9g02629 Ssu1g1822 Sto12g1210 . . . . . Vimu10g00956 . . Vra3g1131
Pvu9g2004 Acco13g1040 Accr12g01011 . . . . . . Alju13g1123 . . . . . Bisa02g0337 . . . Dere14g0100 . . Glsi13g0823 Gma15g01965 . . . . . . Lan15g0374 . . . Lasa1g04342 Lele17g0687 Lele18g0835 Lele19g0866 Lele20g0585 . . . . . . . Phco7g02325 Prci9g1138 . . . . . . Ssu1g1828 Sto12g1217 . . . . . Vimu10g00955 . Vivi4g01428 Vra3g1132
Pvu9g2005 . . . . . . . . . . . Apr1g2578 . . . Bva06g00861 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phac9g03239 Phco7g02326 . Psa1g0513 . . . . Spst9g02628 . . . . . . . Vimu10g00954 . Vivi4g01430 Vra3g1134
Pvu9g2006 . . . . . . . . . . . . . . . . . . . . . . . . . . . Lal21g1115 . . . . . . . . . . . . Mepo6g02178 Mesa5g02382 . Mtr2g1892 . Phco7g02327 . . . . . . . . . . . . . . Vimu10g00952 . . Vra3g1135
Pvu9g2007 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vimu10g00950 . . Vra1g1128
   
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Select Species Gene Chromosome Start End Strand
Vra Vra1g1128 Chr1 14031969 14045030 -
Pvu Pvu9g1998 Chr9 28673326 28695609 -
Aed Aed10g0994 Chr10 8725750 8727095 +
Ahy Ahy20g2444 Chr20 130278977 130293857 -
Ahy Ahy10g1963 Chr10 105814634 105829683 -
Cca Cca03g00612 Chr03 10611281 10614319 +
Mepo Mepo5g02840 Chr5 34408360 34427146 +
Mtr Mtr3g0590 Chr3 7794066 7811202 +
Phco Phco7g02320 Chr7 40785518 40810628 -
Pste Pste2g00498 Chr2 4580294 4604505 -
Vimu Vimu10g00961 Chr10 8637144 8670714 +
Vra Vra3g1128 Chr3 11812681 11835281 -
Pvu Pvu9g1999 Chr9 28691723 28693038 +
Pvu Pvu9g2000 Chr9 28694919 28695561 +
Phco Phco7g02321 Chr7 40810751 40811083 +
Pvu Pvu9g2001 Chr9 28696796 28706775 +
Cca Cca03g00637 Chr03 11209376 11218117 -
Mepo Mepo5g02839 Chr5 34395102 34401278 -
Mesa Mesa9g00706 Chr9 14352040 14357804 -
Mtr Mtr3g0589 Chr3 7776727 7782255 -
Phco Phco7g02322 Chr7 40811808 40819944 +
Pumo Pumo10g02219 Chr10 30515686 30522915 -
Rops Rops10g00478 Chr10 12792760 12797719 +
Seca Seca4g03313 Chr4 57062641 57070156 -
Trre Trre5g01749 Chr5 12826322 12832304 -
Vifa Vifa2g00563 Chr2 115618665 115622159 +
Vimu Vimu10g00958 Chr10 8591398 8604200 -
Vra Vra3g1129 Chr3 11841347 11848453 +
Pvu Pvu9g2002 Chr9 28729177 28732975 +
Mepo Mepo5g02837 Chr5 34377032 34380202 -
Mesa Mesa9g00703 Chr9 14278740 14280397 -
Mtr Mtr3g0588 Chr3 7760456 7763781 -
Phco Phco7g02323 Chr7 40829709 40833384 +
Pste Pste2g00507 Chr2 4666498 4669479 +
Trre Trre5g01748 Chr5 12818642 12820300 -
Vimu Vimu10g00957 Chr10 8581955 8585380 -
Vra Vra3g1130 Chr3 11864545 11868331 +
Pvu Pvu9g2003 Chr9 28736847 28739753 -
Acco Acco13g1030 Chr13 8376989 8379000 -
Accr Accr12g01002 Chr12 10535905 10537893 -
Alju Alju13g1130 Chr13 30093884 30097278 +
Apr Apr1g2577 Chr1 35230152 35231894 -
Bach Bach2g01710 Chr2 25578476 25581231 +
Bisa Bisa02g0346 Chr02 5914008 5916312 +
Bva Bva06g00863 Chr06 7582861 7585781 +
Dere Dere14g0108 Chr14 1197374 1199930 +
Enph Enph5g0820 Chr5 6755964 6758339 -
Glsi Glsi13g0829 Chr13 26863793 26866346 +
Gma Gma15g01963 Chr15 29675460 29678880 -
Lele Lele17g0692 Chr17 18741190 18743305 +
Lele Lele18g0829 Chr18 5206892 5208888 -
Lele Lele19g0861 Chr19 5231877 5234947 -
Lele Lele20g0591 Chr20 13313588 13315526 +
Mepo Mepo6g02176 Chr6 26480710 26483632 +
Mesa Mesa5g02384 Chr5 41204129 41206057 -
Mibi Mibi13g0993 Chr13 12628450 12630695 -
Mtr Mtr2g1890 Chr2 23356719 23359085 +
Phco Phco7g02324 Chr7 40839335 40841835 -
Prci Prci9g1142 Chr9 25582842 25585408 +
Psa Psa1g0514 Chr1 31750973 31753214 +
Spst Spst9g02629 Chr9 60341628 60343819 +
Ssu Ssu1g1822 Chr1 45610445 45612928 -
Sto Sto12g1210 Chr12 7698179 7700180 -
Vimu Vimu10g00956 Chr10 8572229 8574479 +
Vra Vra3g1131 Chr3 11872916 11875726 -
Pvu Pvu9g2004 Chr9 28747621 28759105 +
Acco Acco13g1040 Chr13 8446679 8456063 -
Accr Accr12g01011 Chr12 10586597 10596124 -
Alju Alju13g1123 Chr13 30033970 30044310 +
Bisa Bisa02g0337 Chr02 5793385 5804702 +
Dere Dere14g0100 Chr14 1107404 1121925 +
Glsi Glsi13g0823 Chr13 26828555 26838981 +
Gma Gma15g01965 Chr15 30566376 30575506 -
Lan Lan15g0374 Chr15 7101358 7120065 -
Lasa Lasa1g04342 Chr1 727566970 727577352 -
Lele Lele17g0687 Chr17 18713927 18722891 +
Lele Lele18g0835 Chr18 5230406 5239980 -
Lele Lele19g0866 Chr19 5250748 5259389 -
Lele Lele20g0585 Chr20 13286616 13296195 +
Phco Phco7g02325 Chr7 40850254 40867494 +
Prci Prci9g1138 Chr9 25530601 25540789 +
Ssu Ssu1g1828 Chr1 45800319 45810086 +
Sto Sto12g1217 Chr12 7727515 7736493 -
Vimu Vimu10g00955 Chr10 8552703 8562996 -
Vivi Vivi4g01428 Chr4 52648557 52657656 -
Vra Vra3g1132 Chr3 11884137 11896532 +
Pvu Pvu9g2005 Chr9 28760668 28762578 -
Apr Apr1g2578 Chr1 35236277 35237912 +
Bva Bva06g00861 Chr06 7578206 7579369 -
Phac Phac9g03239 Chr9 31960694 31962188 -
Phco Phco7g02326 Chr7 40871419 40873043 -
Psa Psa1g0513 Chr1 31735517 31736836 -
Spst Spst9g02628 Chr9 60332019 60333013 -
Vimu Vimu10g00954 Chr10 8549106 8550393 +
Vivi Vivi4g01430 Chr4 52814215 52815159 -
Vra Vra3g1134 Chr3 11903574 11904996 -
Pvu Pvu9g2006 Chr9 28766162 28771241 -
Lal Lal21g1115 Chr21 13705319 13710191 -
Mepo Mepo6g02178 Chr6 26499322 26503742 -
Mesa Mesa5g02382 Chr5 41186713 41191176 +
Mtr Mtr2g1892 Chr2 23367993 23372548 -
Phco Phco7g02327 Chr7 40877470 40881701 -
Vimu Vimu10g00952 Chr10 8530386 8534489 +
Vra Vra3g1135 Chr3 11915194 11920109 -
Pvu Pvu9g2007 Chr9 28779645 28782010 -
Vimu Vimu10g00950 Chr10 8517351 8523148 +
Vra Vra1g1128 Chr1 14031969 14045030 -