Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2578 ATGGCAAAAAAAGAGATGGAAGTTGTGAAGGGTTTGGACTTGGAAAGGTACATGGGGCGGTGGTATGAGATAGCTTCTTTCCCATCATTTTTTCAGCCAAAGGATGGTGTGAACACAAGAGCCACATACAAACTGAATAGTGATGGAACTGTGCATGTGCTGAACGAGACCTGGAGTAATGGCAAAAGAAGTTCCATAGAGGGAACTGCTTATAAGGCCAACCCCAACTCTGATGAGGCAAAGTTGAAGGTCAAGTTCTATCTTCCTCCCTTCTTGCCCATCATTCCTGTTGTTGGTAATTACTGGGTTTTGTTCGTTGATGATCAATATCAGTTTGCTTTGATTGGAGAACCCACCAGAAAATACCTTTGGATATTATGTAGGAAGACCCATCTGGAAGATGAAATCTACAACCAGTTAGTTGAGAAGGCGAAGGAAGAAGGATATGATGTGAGTAAACTCCACAAGACTCCTCAGAGCGATCCTCCACCACCAGGGGAAGAAGGCCCCCAAGACACAAAGGGGTTTTGGTGGTTCAAATCCCTGTTTGGGAAATAG 558 0.4427 MAKKEMEVVKGLDLERYMGRWYEIASFPSFFQPKDGVNTRATYKLNSDGTVHVLNETWSNGKRSSIEGTAYKANPNSDEAKLKVKFYLPPFLPIIPVVGNYWVLFVDDQYQFALIGEPTRKYLWILCRKTHLEDEIYNQLVEKAKEEGYDVSKLHKTPQSDPPPPGEEGPQDTKGFWWFKSLFGK* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2578 185 CDD lipocalin_Blc-like 9 157 - -
Apr1g2578 185 MobiDBLite consensus disorder prediction 151 174 - -
Apr1g2578 185 PRINTS Bacterial lipocalin signature 12 26 IPR002446 -
Apr1g2578 185 PRINTS Bacterial lipocalin signature 49 58 IPR002446 -
Apr1g2578 185 PRINTS Bacterial lipocalin signature 121 132 IPR002446 -
Apr1g2578 185 PRINTS Bacterial lipocalin signature 148 158 IPR002446 -
Apr1g2578 185 Gene3D - 1 162 IPR012674 -
Apr1g2578 185 PIRSF Lipocalin_ApoD 1 170 IPR022271 -
Apr1g2578 185 PANTHER TEMPERATURE-INDUCED LIPOCALIN-1-LIKE 1 185 - -
Apr1g2578 185 ProSitePatterns Lipocalin signature. 11 24 IPR022272 -
Apr1g2578 185 SUPERFAMILY Lipocalins 5 167 IPR012674 -
Apr1g2578 185 Pfam Lipocalin-like domain 12 159 IPR000566 -
Apr1g2578 185 PANTHER APOLIPOPROTEIN D 1 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2578 Apr-Chr1 35236277 35237912 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2578 K03098 - pvy:116131079 341.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2578 1 35236277 35237912 Apr1g2578 1 35236277 35237912 ECH