Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00961 ATGCTTTCCCCTGCCGCGAGAATCATAACCAGAAAGACTCTGGAAAGAAGAAGAGAGTTTCTTGCAAAACCCCAACCCAAGACTAGAGAACGAGACAAAGGACAACGCTTCCCCTGCGAGCAAACCAAATTGGAAAAGAGGAAGGAGAAATGGTATCTCCTTTTTCTAACCTGTGACCTCCCTAGAACGAGAAAGGAGAGAAACCCCCCTATGTTTAACGTCAGATGCAAGGGTTGTGAGGAGGAACTGCTCGACGTGGATGGTGTGGTGGAAGGGGAGACCGAGGAACTCCACGTTGACGTTGACGAAGATACGGCCGAAGGTGCCGAGACCTACGACAACGACGGGGAAGTTGGAGATGGGTGGACGAACGAGGTGAGTGAGTGCGACAATTCTGGAAAAGGGGTGATTGTTTCGTCTGTGCAGCAGGAACGTGATTCGGAAGGGGTTTATACTGTGTTGCGAAAACTTGGGCAGAGCAAGGAGAGTAGAGTCGGCCAAGTGACAATGGGGGGTGATGATAGTCTAAAGACATGGGTATCAGATAAATTAATGTCCCTACTGGGATATTCTCAGCCCACAGTCGTACAGTACATGATTGGACTAACCAAACAAGCTACTTCACCAGCTGATTTGGTGGGCAAGCTAGTGGAGTTTGGGATCTCATCAATGGACACTCGTGCATTTGCGGAAGAAATTTACTCAAGAGTTCCTCGCAAGTCATCTGGTTTAAATCAATATCAAAAACAAGAGAGAGAAGCTGTAATGTTGGCCAGGAAGCAGAAGACTTACACAATTTTGAAGGCTGATGACGATAGTGATGATGAATCTGTGGATAAATCTTCAATAACTACTACTGCATCTGGAAGGCTTGACAATCACAAAAAAAAGCGTTTCAGGAAGAAAACTGAAGTGATTTTGAGAAAGGAAAGTGAGAGACAAGTGAAGAGAAGAACTTCCTCCGATGATGATAATGATTCGGAGTCTGAAGAAGAAAGGTTGAAAGATCAAAGAGAGAAGGAGGAATTAGAGCAGCATATGAGAGATCGAGATGCTGCTGGGACGCGGAAGTTGACTGAACATAAATTATCACGAAAGGAGGAAGGTATGTTTATTGAAATTCGAAGATCTAGTGCTGCAGAGCCAGAGGATATTCGAGCTTTGAGAAAGGTTTCAAGGCAAGAATACTTGAAGAAAAGGGAGGAAAAGAAATTAGAAGAACTAAGAGATGATATAGAAGATGAGCAATATCTGTTTGAAGGTGTGAAGCTTTCAGAAGCAGAATATCGTGAACTGAGGTACAAGAAAGAAATCTATGAACTAGTGAAGAAGCGCACAGAAGAGGCTGACAATGTGAATGAGTATAGAATGCCGGATGCTTATGATGAGGAAGGTGGTGTTAATCAGGAGAAGAGGTTTTCTGTGGCTATGCAGCGTTACAGGGATCCAAATGCTGAGGATAAAATGAATCCATTTGCTGAACAAGAGGCTTGGGAGGAACATCAAATTGGAAAGGCAACACTGAAGTATGGTTCAAAGAATAAAAAACAAGTCTCTGATGATTATCAGTGTTTGGAAAGCAAGGATACAGATAATAGTGTGGTGTTATCTAGTAGGAGTTGTTGGGATGTTAGGATGTCTATGTTGAACCATAGCCATCAATTATCAATGATGAACCTGAGAATGGAGGATAAATCTTTCACCAAGAAATTTCAGAACCACTACTCAAAAGCTATAAAGGATGGGGGTTGGTGTGAGTTTGTGACACTCAACAATCTCTTTGAACAAGATTCAGGGTGTTGTGTCCAGGAAAAGGTCATAGTCTCGACTGAAGATCTTACCAAGCATGATTTCGAGTATGTGTTTGAGGACCAGATTGAATTTATAAAGGCATCAGTAATGGATGGAGATAAGTTTGATTATGAAGAGCCGGAAGATTCTCTTGAAAAGTCCAGACAAAAGTCAGCTTTTGAGGCACTTCAGGTACTTGTAATTGTTGGAGAAACTGGTTCTGGAAAGACAACACAGATCCCCCAATATCTTCATGAAGTTGGATACACAAAGCATGGAATGATTGCCTGTACTCAGCCACGGCGTGTTGCAGCTATGAGTGTTGCTGCCCGAGTTTCTCAAGAAATGGGTGTTAAATTAGGACATGAGGTTGGTTACTCCATCCGTTTTGAAGATTGTACATCAGAGAAAACCATTCTGAAATATATGACTGATGGAATGTTACTGAGGGAATTTCTTGGTGAGCCTGATCTAGCAAGTTATAGTGTTGTGATGGTGGATGAGGCTCACGAAAGAACACTCTCAACGGATATTTTGTTTGGATTAGTAAAGGATATTGCTCGATTCCGGCCTGATCTCAAGTTGCTGATATCAAGTGCTACACTTGATGCTGAGAAATTCAGTGATTACTTTGATTCTGCACCAATATTCAGAATTCCAGGGAGACGATATCCTGTTGAAATAAACTACACGAAAGCACCTGAGGCTGACTACTTGGATGCTGCTATTGTCACCTCGCTTCAAATCCATGTCACTCAACCTCCTGGAGATATATTGGTATTCCTTACTGGACAAGAAGAAATTGAAACAGCAGAAGAAATCTTGAAGCATAGAACTAGAGGCTTGGGGACTAAAATTGCTGAGTTAATAATATGCCCTATATATGCCAATCTTCCAACTGAATTACAGGCTAAAATATTTGAACCCACTCCTGAAGGAGCACGAAAGGTGGTACTTGCAACTAATATTGCAGAAACGTCATTGACAATTGATGGGATCAAGTATGTCATTGATCCAGGATTCGTTAAGATGAAAAGCTATAATCCTAGAACAGGAATGGAATCTTTGCTAGTAACTCCCATATCAAAAGCTTCAGCCAATCAGAGGGCAGGTCGTTCTGGAAGAACAGGTCCTGGAAAGTGCTTCCGACTGTACACTGCATATAATTTTCACAATGATTTGGAGGAAAACACTGTTCCTGAAATACAGCGGACTAACCTTGCAAATGTAGTTTTGACTTTAAAAAGTCTTGGTATTCATGATTTGTTGAACTTTGATTTTATGGATCCTCCCCCTGCTGAGGCCTTATTAAAAGCTTTGGAGCTTCTATTTGCATTAAGTGCATTAAATAAGCTCGGTGAGTTAACCAAGGTCGGTAGACGGATGGCAGAGTTCCCACTTGATCCTATGTTGTCAAAAATGATAGTGGCTTCAGAAAACTTCAAGTGTTCAGATGATATCATTTCAATTGCTGCTATGCTTTCTGTTGGAAACTCAATATTTTACCGTCCAAAGGATAAACAAGTACATGCAGACAATGCAAGGATGAATTTTCACACGGGAAATGTTGGAGACCATATTGCATTGCTAAAGGTTCCGTTGCTGCTGGCTTTTTCTGTCTACAATTCGTGGAAGGAGACCAATTATTCAACGCAATGGTGTTATGAAAATTATATACAGGTATTGACCTTCTACTGCAAACCATTATTTGGGGTAAGGAGTATGAAACGGGCAAGGGATATCCGTGATCAACTGGCAGGTCTTTTAGAGAGGGTTGAAATTGAACTAATATCAAATGAAAGTGATTTAGATGCCATCAAGAAATCTATTACTTCTGGGTTTTTCCCACACTCTGCTAGGCTCCAAAAGAATGGATCTTATCGAACTATCAAACATCCACAGACTGTTCACATACATCCTAGTGCAGGGCTGGCAGAGGTGACAGAATTAAAGCCGGAGTGGTTGGTGGAGATTGCGCCCCACTACTACCAGCTTAAGGATGTTGAAGACTGTTGTCATACTGTTAATGTATCTTTAGCTGTTTAG 3837 0.4165 MLSPAARIITRKTLERRREFLAKPQPKTRERDKGQRFPCEQTKLEKRKEKWYLLFLTCDLPRTRKERNPPMFNVRCKGCEEELLDVDGVVEGETEELHVDVDEDTAEGAETYDNDGEVGDGWTNEVSECDNSGKGVIVSSVQQERDSEGVYTVLRKLGQSKESRVGQVTMGGDDSLKTWVSDKLMSLLGYSQPTVVQYMIGLTKQATSPADLVGKLVEFGISSMDTRAFAEEIYSRVPRKSSGLNQYQKQEREAVMLARKQKTYTILKADDDSDDESVDKSSITTTASGRLDNHKKKRFRKKTEVILRKESERQVKRRTSSDDDNDSESEEERLKDQREKEELEQHMRDRDAAGTRKLTEHKLSRKEEGMFIEIRRSSAAEPEDIRALRKVSRQEYLKKREEKKLEELRDDIEDEQYLFEGVKLSEAEYRELRYKKEIYELVKKRTEEADNVNEYRMPDAYDEEGGVNQEKRFSVAMQRYRDPNAEDKMNPFAEQEAWEEHQIGKATLKYGSKNKKQVSDDYQCLESKDTDNSVVLSSRSCWDVRMSMLNHSHQLSMMNLRMEDKSFTKKFQNHYSKAIKDGGWCEFVTLNNLFEQDSGCCVQEKVIVSTEDLTKHDFEYVFEDQIEFIKASVMDGDKFDYEEPEDSLEKSRQKSAFEALQVLVIVGETGSGKTTQIPQYLHEVGYTKHGMIACTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDILFGLVKDIARFRPDLKLLISSATLDAEKFSDYFDSAPIFRIPGRRYPVEINYTKAPEADYLDAAIVTSLQIHVTQPPGDILVFLTGQEEIETAEEILKHRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFVKMKSYNPRTGMESLLVTPISKASANQRAGRSGRTGPGKCFRLYTAYNFHNDLEENTVPEIQRTNLANVVLTLKSLGIHDLLNFDFMDPPPAEALLKALELLFALSALNKLGELTKVGRRMAEFPLDPMLSKMIVASENFKCSDDIISIAAMLSVGNSIFYRPKDKQVHADNARMNFHTGNVGDHIALLKVPLLLAFSVYNSWKETNYSTQWCYENYIQVLTFYCKPLFGVRSMKRARDIRDQLAGLLERVEIELISNESDLDAIKKSITSGFFPHSARLQKNGSYRTIKHPQTVHIHPSAGLAEVTELKPEWLVEIAPHYYQLKDVEDCCHTVNVSLAV 1278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00961 1278 Pfam Helicase associated domain (HA2) 1036 1110 IPR007502 GO:0004386
Vimu10g00961 1278 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 661 1162 IPR027417 -
Vimu10g00961 1278 Gene3D - 626 819 IPR027417 -
Vimu10g00961 1278 MobiDBLite consensus disorder prediction 331 362 - -
Vimu10g00961 1278 PANTHER ATP-DEPENDENT RNA HELICASE 655 1252 - -
Vimu10g00961 1278 FunFam pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 650 819 - -
Vimu10g00961 1278 MobiDBLite consensus disorder prediction 310 362 - -
Vimu10g00961 1278 CDD SF2_C_RHA 821 982 - -
Vimu10g00961 1278 Gene3D - 820 995 IPR027417 -
Vimu10g00961 1278 Coils Coil 324 344 - -
Vimu10g00961 1278 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 1019 1120 - -
Vimu10g00961 1278 Gene3D - 1019 1196 - -
Vimu10g00961 1278 SMART ha2_5 1035 1127 IPR007502 GO:0004386
Vimu10g00961 1278 Coils Coil 1172 1192 - -
Vimu10g00961 1278 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 840 1015 IPR001650 -
Vimu10g00961 1278 MobiDBLite consensus disorder prediction 310 324 - -
Vimu10g00961 1278 SMART ultradead3 617 826 IPR014001 -
Vimu10g00961 1278 Coils Coil 391 418 - -
Vimu10g00961 1278 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 654 817 IPR014001 -
Vimu10g00961 1278 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 759 768 IPR002464 -
Vimu10g00961 1278 SMART helicmild6 866 974 IPR001650 -
Vimu10g00961 1278 Pfam Helicase conserved C-terminal domain 847 974 IPR001650 -
Vimu10g00961 1278 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 820 995 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00961 Vimu-Chr10 8637144 8670714 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00961 K12813 - gmx:100809559 1441.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00961 10 8637144 8670714 Vimu10g00961 10 8637144 8670714 ECH