Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1998 ATGGGGGGTGATGATAGTCTAAAGACATGGGTATCAGAAAAATTAATGTCCCTACTGGGATATTCTCAGCCCACAGTCGTACAGTACATGATTGGACTATCCAAACAAGCTACTTCACCAGCTGATTTGGTGGGCAAGCTAGTGGAGTTCGGGATCTCGTCTACGGATACTCATGCATTTGCGGAAGAAATTTACTCCAGAGTTCCTCGCAAATCATCTGGTTTAAATCAATATCAAAAACAAGAGAGAGAAGCTGTAATGTTGGCCAGGAAGCAGAAGACTTACACAATTTTGAAGGCTGATGACGATAGTGATGATGAATCTGTGGATAAATCTTCATTAACTACTTCTTCTTCATCTAGAAGGCCTGAAGATCATAAAAAAAAGCGTTTCAGGAAGAAAACTGAAGTTGAAGATGATCAAGACGACGAGGGGATTTTGAGAAAGGAAAGTGAGAGACAAGTGAAGAGAAGAACTTCCCCTGATGGTGATGATGATGATTCGGAGTCTGAAGAAGAAATGTTGAAAGATCAAAGAGAGAAGGAGGAATTAGAGCAGCATATGAGAGAACGAGATGCAGCAGGGACACGGAAGCTGACTGAACATAAATTATCACGAAAGGAGGAAGAAGAGGCAATTCGAAGATCTACTGCTGCTGAGCGGGATGATATTCAAGCTTTGAGAAAGGTTTCACGGCAAGAATACTTGAAGAAAAGGGAGGAAAAGAAATTAGAAGAACTGAGAGATGACATAGAAGATGAGCAATATCTGTTTGAAGGTGTGAAGCTTTCAGAAGCAGAATATCGTGAACTGAGGTACAAGAAAGAGATATATGAACTTGTGAAGAAGCGCACAGAGGAGGCTGACAATGTGAATGAGTATAGAATACCAGAAGCTTATGATGAGGAAGGTGGTGTTAACCAGGAGAAGAGATTTTCTGTGGCTATGCAGCGTTACAGGGATCCAAATGCTGAGGATAAAATGAATCCATTTGCTGAACAGGAGGCTTGGGAGGAACATCAAATTGGAAAGGCAACGCTGAAGTTTGGTTCAAAAAATAAAAAAGTCTCTGATGATTATCAGTATGTGTTTGAGGACCAGATTGATTTTATCAAGGCATCAGTAATGGATGGAGATAAGTTTGATTATGAAGAGATGGAAGATTCTCTTGAAAAGTCCAGAGCAAAGTCAGCTTTGGAGGCACTTCAGGAGGAGAGGAAAAAGTTACCCATGTACCGCTATCGGGATGAATTGCTCCAAGCTATTAATGATCACCAGGTACTTGTAATTGTTGGAGAAACTGGTTCCGGAAAGACAACACAGATCCCCCAATATCTTCATGACGTTGGCTACACGAAGCGTGGAATGATTGCATGTACTCAGCCACGGCGTGTAGCAGCTATGAGTGTTGCTGCTCGAGTTTCTCAAGAAATGGGTGTTAAATTAGGACATGAGGTTGGTTACTCCATCCGTTTTGAAGATTGTACATCAGAGAAAACCATTCTGAAATATATGACTGATGGAATGTTACTGAGGGAATTTCTTGGTGAGCCTGATCTAGCAAGTTATAGTGTTGTAATGGTGGATGAGGCTCACGAAAGAACACTCTCAACTGATATTTTGTTTGGATTAGTAAAGGATATTGCTCGTTTCCGGCCTGATCTCAAGTTGCTGATATCAAGTGCTACACTTGATGCAGAGAAATTCAGTGATTACTTTGATTCTGCGCCAATATTCAGAATTCCAGGGAGAAGATATCCTGTTGAAATAAACTACACCAAAGCACCTGAGGCTGATTACTTGGATGCCGCTATTGTCACCTCACTTCAAATCCATGTCACTCAACCTCCTGGAGATATATTGGTATTCTTCACTGGTCAAGAAGAAATTGAAACGGCAGAAGAAATCTTGAAGCATAGAACTAGAGGCTTGGGAACTAAAATTGCTGAGTTAATAATATGCCCTATATATGCCAATCTTCCAACTGAATTACAGGCTAAAATATTTGAACCCACTCCTGAAGGAGCTCGAAAGGTGGTCCTTGCTACTAATATTGCAGAAACGTCATTGACAATTGATGGGATCAAGTATGTCATTGATCCAGGATTCTGTAAGATGAAAAGTTATAATCCAAGAACAGGAATGGAGTCTTTGCTAGTAACTCCCATCTCAAAAGCTTCAGCAAATCAAAGAGCTGGTCGTTCTGGTAGAACAGGTCCTGGAAAGTGCTTCCGACTGTACACTGCATACAATTTTCACAATGATTTGGAGGAAAATACTGTTCCTGAAATACAGAGGACGAACCTTGCAAATGTAGTTTTGACTTTAAAAAGTCTTGGTATTCATGACTTGTTGAACTTTGATTTTATGGATCCTCCCCCTGCCGAGGCCTTATTAAAAGCTCTGGAGCTTTTGTTTGCATTAAGTGCATTGAATAAGCTAGGCGAGTTAACCAAGGTGGGTAGACGGATGGCAGAGTTCCCACTTGATCCTATGTTATCAAAAATGATAGTCGCCTCAGAAAATTTCAAGTGTTCAGATGATATCATTTCAATTGCTGCTATGCTTTCTGTTGGAAACTCAATATTTTACCGTCCAAAGGATAAACAAGTTCATGCAGACAATGCAAGGATGAATTTTCACACTGGAAATGTTGGAGATCATATTGCATTGCTAAAGGTCTACAATTCGTGGAAGGAGACCAATTATTCAACGCAATGGTGTTATGAAAACTATATACAGGTAAGGAGTATGAAACGGGCTAGGGATGTCCGTGATCAACTGGCAGGTCTTTTAGAGAGGGTTGAGATTGAACTAACATCAAATGAAAGTGATTTAGATGCCATCAAGAAATCTATCACTTCTGGATTTTTCCCACACTCTGCTCGACTGCAAAAGAATGGATCTTATCGAACTGTTAAACATTCACAGACTGTTCACATACATCCTAGTGCGGGGCTGGCACAGGTTCTTCCTAGATGGGTTATATACCATGAACTAGTACTCACAACCAAGGAATATATGAGACAGGTGACAGAGTTAAAGCCAGATTGGTTGGTGGAGATAGCGCCCCACTATTACCAGCTTAAGGACGTTGAAGACTCGTCTTCGAAGAAAATGCCTCGTGGAGCAGGCCGTGCACAAGAGGAAAAGTAA 3156 0.4094 MGGDDSLKTWVSEKLMSLLGYSQPTVVQYMIGLSKQATSPADLVGKLVEFGISSTDTHAFAEEIYSRVPRKSSGLNQYQKQEREAVMLARKQKTYTILKADDDSDDESVDKSSLTTSSSSRRPEDHKKKRFRKKTEVEDDQDDEGILRKESERQVKRRTSPDGDDDDSESEEEMLKDQREKEELEQHMRERDAAGTRKLTEHKLSRKEEEEAIRRSTAAERDDIQALRKVSRQEYLKKREEKKLEELRDDIEDEQYLFEGVKLSEAEYRELRYKKEIYELVKKRTEEADNVNEYRIPEAYDEEGGVNQEKRFSVAMQRYRDPNAEDKMNPFAEQEAWEEHQIGKATLKFGSKNKKVSDDYQYVFEDQIDFIKASVMDGDKFDYEEMEDSLEKSRAKSALEALQEERKKLPMYRYRDELLQAINDHQVLVIVGETGSGKTTQIPQYLHDVGYTKRGMIACTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDILFGLVKDIARFRPDLKLLISSATLDAEKFSDYFDSAPIFRIPGRRYPVEINYTKAPEADYLDAAIVTSLQIHVTQPPGDILVFFTGQEEIETAEEILKHRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFCKMKSYNPRTGMESLLVTPISKASANQRAGRSGRTGPGKCFRLYTAYNFHNDLEENTVPEIQRTNLANVVLTLKSLGIHDLLNFDFMDPPPAEALLKALELLFALSALNKLGELTKVGRRMAEFPLDPMLSKMIVASENFKCSDDIISIAAMLSVGNSIFYRPKDKQVHADNARMNFHTGNVGDHIALLKVYNSWKETNYSTQWCYENYIQVRSMKRARDVRDQLAGLLERVEIELTSNESDLDAIKKSITSGFFPHSARLQKNGSYRTVKHSQTVHIHPSAGLAQVLPRWVIYHELVLTTKEYMRQVTELKPDWLVEIAPHYYQLKDVEDSSSKKMPRGAGRAQEEK* 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1998 1051 Gene3D - 367 584 IPR027417 -
Pvu9g1998 1051 MobiDBLite consensus disorder prediction 174 223 - -
Pvu9g1998 1051 SMART ha2_5 800 892 IPR007502 GO:0004386
Pvu9g1998 1051 Pfam Helicase conserved C-terminal domain 612 739 IPR001650 -
Pvu9g1998 1051 Coils Coil 918 938 - -
Pvu9g1998 1051 MobiDBLite consensus disorder prediction 102 223 - -
Pvu9g1998 1051 Coils Coil 230 257 - -
Pvu9g1998 1051 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 419 582 IPR014001 -
Pvu9g1998 1051 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 405 933 IPR027417 -
Pvu9g1998 1051 CDD SF2_C_RHA 586 747 - -
Pvu9g1998 1051 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 949 1026 IPR011709 -
Pvu9g1998 1051 Gene3D - 585 760 IPR027417 -
Pvu9g1998 1051 MobiDBLite consensus disorder prediction 120 164 - -
Pvu9g1998 1051 Pfam Helicase associated domain (HA2) 801 875 IPR007502 GO:0004386
Pvu9g1998 1051 SMART ultradead3 407 591 IPR014001 -
Pvu9g1998 1051 PANTHER ATP-DEPENDENT RNA HELICASE 110 1048 - -
Pvu9g1998 1051 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 524 533 IPR002464 -
Pvu9g1998 1051 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 605 780 IPR001650 -
Pvu9g1998 1051 Gene3D - 784 942 - -
Pvu9g1998 1051 SMART helicmild6 631 739 IPR001650 -
Pvu9g1998 1051 PANTHER OS05G0389800 PROTEIN 110 1048 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1998 Pvu-Chr9 28673326 28695609 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1998 K12813 - gmx:100809559 1866.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1998 9 28673326 28695609 Pvu9g1998 9 28673326 28695609 ECH