Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1129 ATGGGTTGTTTCTTGAGCAAAAACGGCGATACCAACGCCAACAGGATCGCACGTTGGCGAGCCACTGGAATTGTTGCTTTGCGCGATTCCAAATTAAAGGCCTTTTTTGGTATGAATGGATTTTTGGAAAAAGTGATGTTATACTGTTGTGTGATACTTGCGAGACTCGTCAAAACATTTGACAGAGAACACGTTTACTTACAATGGAGCCTTTGCAAACAGTCATTTCCAGATGAAATTATTAAGTTAGACACATCTGTTCGCACTCTTGACTTGACGCATAATCGAATAGTTGACATTCCTATGGAAATCAACAAGTTAATTAATATACAACGAATGGTATTAGCGGAGAACTTAATTGAGAGACTGCCAATGAGTTTAGGCAAACTCCAATCGTTGAAACTGTTGAACCTGGATGGAAATCGAATAACTTCCTTACCTGATGAATTGGACCAGTTAGTAAGGCTTGAACGCTTATCTGTCTCAAGGAATTTATTAGCATCCTTGCCAATGACTATTGGAAGTTTGAGAAATTTGGTGCTTTTGAATGTGTCAAATAACAAGTTACGGTCCCTTCCAGAATCTGTTGGCAGTTGCTCCTCTTTGGAAGAGTTACAAGCAAATGATAATCTTATAGAAGATCTTCCATCTTCTGTGTGCAATCTCTCTCACTTAAAGTCACTTTGCTTGGATAACAATAATGTGAAGCAGACTCCTCGGAATTTATTGAAAGACTGCAAAGCTCTTCAGAACATATCACTGCATGGTAATCCTATATCAATGGATCAATTGCAACAGATGGAGGGGTTTCAAGAGTTTGAAGCAAGGAGGAAAAAGAAGTTTGACAAACAAAATGATTCAAATGTGATGATCGGTTCAAAAGGTCTTGATGAGGGTGTTGATTTATGA 909 0.385 MGCFLSKNGDTNANRIARWRATGIVALRDSKLKAFFGMNGFLEKVMLYCCVILARLVKTFDREHVYLQWSLCKQSFPDEIIKLDTSVRTLDLTHNRIVDIPMEINKLINIQRMVLAENLIERLPMSLGKLQSLKLLNLDGNRITSLPDELDQLVRLERLSVSRNLLASLPMTIGSLRNLVLLNVSNNKLRSLPESVGSCSSLEELQANDNLIEDLPSSVCNLSHLKSLCLDNNNVKQTPRNLLKDCKALQNISLHGNPISMDQLQQMEGFQEFEARRKKKFDKQNDSNVMIGSKGLDEGVDL* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1129 302 Gene3D Ribonuclease Inhibitor 24 290 IPR032675 -
Vra3g1129 302 Pfam Leucine rich repeat 86 143 IPR001611 GO:0005515
Vra3g1129 302 ProSiteProfiles Leucine-rich repeat profile. 132 153 IPR001611 GO:0005515
Vra3g1129 302 SUPERFAMILY RNI-like 66 262 - -
Vra3g1129 302 ProSiteProfiles Leucine-rich repeat profile. 86 107 IPR001611 GO:0005515
Vra3g1129 302 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 7 7 44 - -
Vra3g1129 302 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 7 79 294 - -
Vra3g1129 302 SMART LRR_bac_2 130 149 - -
Vra3g1129 302 SMART LRR_bac_2 199 218 - -
Vra3g1129 302 SMART LRR_bac_2 153 172 - -
Vra3g1129 302 SMART LRR_bac_2 222 241 - -
Vra3g1129 302 SMART LRR_bac_2 176 195 - -
Vra3g1129 302 SMART LRR_typ_2 222 245 IPR003591 -
Vra3g1129 302 SMART LRR_typ_2 176 199 IPR003591 -
Vra3g1129 302 SMART LRR_typ_2 130 152 IPR003591 -
Vra3g1129 302 SMART LRR_typ_2 153 175 IPR003591 -
Vra3g1129 302 SMART LRR_typ_2 85 107 IPR003591 -
Vra3g1129 302 ProSiteProfiles Leucine-rich repeat profile. 178 199 IPR001611 GO:0005515
Vra3g1129 302 PANTHER LEUCINE-RICH REPEAT-CONTAINING 7 44 - -
Vra3g1129 302 PANTHER LEUCINE-RICH REPEAT-CONTAINING 79 294 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1129 77 274 Receptor kinase-like Gene Family AT3G47570 31.068 7.34e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1129 - - vra:106756807 573.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1129 3 11841347 11848453 Vra3g1129 3 11841347 11848453 ECH